Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5957 and GFF5958 are separated by 7 nucleotides GFF5958 and GFF5959 are separated by 2 nucleotides
GFF5957 - Uncharacterized MFS-type transporter, at 12,644 to 13,969
GFF5957
GFF5958 - FIG00537018: hypothetical protein, at 13,977 to 14,696
GFF5958
GFF5959 - Putative amidase R03093, at 14,699 to 16,048
GFF5959
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 13.001 kb on + strand, within GFF5957 at 13.001 kb on + strand, within GFF5957 at 13.002 kb on - strand, within GFF5957 at 13.442 kb on + strand, within GFF5957 at 13.443 kb on - strand, within GFF5957 at 13.443 kb on - strand, within GFF5957 at 13.443 kb on - strand, within GFF5957 at 13.472 kb on + strand, within GFF5957 at 13.473 kb on - strand, within GFF5957 at 13.473 kb on - strand, within GFF5957 at 13.601 kb on + strand, within GFF5957 at 13.601 kb on + strand, within GFF5957 at 13.724 kb on + strand, within GFF5957 at 13.724 kb on + strand, within GFF5957 at 13.775 kb on + strand, within GFF5957 at 13.796 kb on + strand, within GFF5957 at 13.797 kb on - strand, within GFF5957 at 13.797 kb on - strand, within GFF5957 at 13.797 kb on - strand, within GFF5957 at 13.889 kb on + strand at 13.890 kb on - strand at 13.890 kb on - strand at 13.890 kb on - strand at 14.166 kb on + strand, within GFF5958 at 14.166 kb on + strand, within GFF5958 at 14.167 kb on - strand, within GFF5958 at 14.322 kb on + strand, within GFF5958 at 14.664 kb on + strand at 14.664 kb on + strand at 14.831 kb on + strand at 14.832 kb on - strand at 14.832 kb on - strand at 14.936 kb on + strand, within GFF5959 at 14.937 kb on - strand, within GFF5959 at 14.937 kb on - strand, within GFF5959 at 14.937 kb on - strand, within GFF5959
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 13,001 + GFF5957 0.27 -0.3 13,001 + GFF5957 0.27 +1.4 13,002 - GFF5957 0.27 -1.7 13,442 + GFF5957 0.60 -2.3 13,443 - GFF5957 0.60 +1.2 13,443 - GFF5957 0.60 -1.5 13,443 - GFF5957 0.60 -0.3 13,472 + GFF5957 0.62 -3.4 13,473 - GFF5957 0.63 -2.2 13,473 - GFF5957 0.63 -0.2 13,601 + GFF5957 0.72 -1.5 13,601 + GFF5957 0.72 -1.3 13,724 + GFF5957 0.81 -2.5 13,724 + GFF5957 0.81 -1.0 13,775 + GFF5957 0.85 -0.7 13,796 + GFF5957 0.87 +0.3 13,797 - GFF5957 0.87 +0.7 13,797 - GFF5957 0.87 -0.8 13,797 - GFF5957 0.87 -2.6 13,889 + -1.1 13,890 - +0.9 13,890 - +0.8 13,890 - -1.9 14,166 + GFF5958 0.26 +1.3 14,166 + GFF5958 0.26 -1.6 14,167 - GFF5958 0.26 -1.9 14,322 + GFF5958 0.48 -0.2 14,664 + -2.3 14,664 + +0.5 14,831 + -2.1 14,832 - -0.1 14,832 - +2.3 14,936 + GFF5959 0.18 -3.6 14,937 - GFF5959 0.18 -0.3 14,937 - GFF5959 0.18 -3.1 14,937 - GFF5959 0.18 -0.5
Or see this region's nucleotide sequence