Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5827 and GFF5828 overlap by 4 nucleotides GFF5828 and GFF5829 are separated by 12 nucleotides
GFF5827 - FIG00452956: hypothetical protein, at 2,981 to 4,054
GFF5827
GFF5828 - Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1), at 4,051 to 4,920
GFF5828
GFF5829 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 4,933 to 6,201
GFF5829
Position (kb) 4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3.120 kb on + strand, within GFF5827 at 3.121 kb on - strand, within GFF5827 at 3.121 kb on - strand, within GFF5827 at 3.201 kb on + strand, within GFF5827 at 3.201 kb on + strand, within GFF5827 at 3.201 kb on + strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.489 kb on + strand, within GFF5827 at 3.490 kb on - strand, within GFF5827 at 3.490 kb on - strand, within GFF5827 at 3.490 kb on - strand, within GFF5827 at 3.645 kb on + strand, within GFF5827 at 3.645 kb on + strand, within GFF5827 at 3.645 kb on + strand, within GFF5827 at 3.646 kb on - strand, within GFF5827 at 3.646 kb on - strand, within GFF5827 at 3.795 kb on + strand, within GFF5827 at 3.795 kb on + strand, within GFF5827 at 4.306 kb on + strand, within GFF5828 at 4.306 kb on + strand, within GFF5828 at 4.307 kb on - strand, within GFF5828 at 4.586 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.835 kb on + strand at 4.835 kb on + strand at 4.869 kb on - strand at 4.910 kb on + strand at 4.934 kb on + strand at 4.935 kb on - strand at 4.935 kb on - strand at 4.935 kb on - strand at 5.090 kb on + strand, within GFF5829 at 5.090 kb on + strand, within GFF5829 at 5.090 kb on + strand, within GFF5829 at 5.090 kb on + strand, within GFF5829 at 5.090 kb on + strand, within GFF5829 at 5.091 kb on - strand, within GFF5829 at 5.091 kb on - strand, within GFF5829 at 5.091 kb on - strand, within GFF5829 at 5.220 kb on - strand, within GFF5829 at 5.220 kb on - strand, within GFF5829 at 5.220 kb on - strand, within GFF5829 at 5.264 kb on + strand, within GFF5829 at 5.264 kb on + strand, within GFF5829 at 5.265 kb on - strand, within GFF5829 at 5.265 kb on - strand, within GFF5829 at 5.265 kb on - strand, within GFF5829 at 5.265 kb on - strand, within GFF5829 at 5.358 kb on - strand, within GFF5829 at 5.390 kb on + strand, within GFF5829 at 5.675 kb on + strand, within GFF5829 at 5.675 kb on + strand, within GFF5829 at 5.676 kb on - strand, within GFF5829 at 5.690 kb on + strand, within GFF5829 at 5.690 kb on + strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.741 kb on + strand, within GFF5829 at 5.741 kb on + strand, within GFF5829 at 5.741 kb on + strand, within GFF5829 at 5.742 kb on - strand, within GFF5829 at 5.742 kb on - strand, within GFF5829 at 5.742 kb on - strand, within GFF5829 at 5.742 kb on - strand, within GFF5829 at 5.810 kb on + strand, within GFF5829 at 5.811 kb on - strand, within GFF5829 at 5.896 kb on + strand, within GFF5829 at 5.897 kb on - strand, within GFF5829 at 5.897 kb on - strand, within GFF5829
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 3,120 + GFF5827 0.13 -1.6 3,121 - GFF5827 0.13 -1.7 3,121 - GFF5827 0.13 -1.0 3,201 + GFF5827 0.20 -0.6 3,201 + GFF5827 0.20 -1.5 3,201 + GFF5827 0.20 -2.6 3,202 - GFF5827 0.21 +0.2 3,202 - GFF5827 0.21 -0.0 3,202 - GFF5827 0.21 +0.2 3,202 - GFF5827 0.21 +3.7 3,202 - GFF5827 0.21 -2.6 3,202 - GFF5827 0.21 -1.0 3,489 + GFF5827 0.47 +1.1 3,490 - GFF5827 0.47 -0.5 3,490 - GFF5827 0.47 -1.3 3,490 - GFF5827 0.47 -0.1 3,645 + GFF5827 0.62 +1.5 3,645 + GFF5827 0.62 -0.6 3,645 + GFF5827 0.62 -1.8 3,646 - GFF5827 0.62 -1.6 3,646 - GFF5827 0.62 -0.1 3,795 + GFF5827 0.76 +1.3 3,795 + GFF5827 0.76 -0.7 4,306 + GFF5828 0.29 -0.6 4,306 + GFF5828 0.29 +0.3 4,307 - GFF5828 0.29 -1.0 4,586 + GFF5828 0.61 -1.7 4,778 + GFF5828 0.84 +0.7 4,778 + GFF5828 0.84 -0.8 4,778 + GFF5828 0.84 -1.0 4,778 + GFF5828 0.84 -1.8 4,835 + +1.0 4,835 + -2.3 4,869 - -0.3 4,910 + +0.4 4,934 + +0.2 4,935 - +2.7 4,935 - +1.2 4,935 - +1.8 5,090 + GFF5829 0.12 +0.3 5,090 + GFF5829 0.12 +0.8 5,090 + GFF5829 0.12 +0.7 5,090 + GFF5829 0.12 +0.3 5,090 + GFF5829 0.12 -0.5 5,091 - GFF5829 0.12 -0.4 5,091 - GFF5829 0.12 +1.5 5,091 - GFF5829 0.12 -0.9 5,220 - GFF5829 0.23 -1.3 5,220 - GFF5829 0.23 -1.1 5,220 - GFF5829 0.23 -1.5 5,264 + GFF5829 0.26 -0.7 5,264 + GFF5829 0.26 -3.4 5,265 - GFF5829 0.26 -1.0 5,265 - GFF5829 0.26 -2.1 5,265 - GFF5829 0.26 -1.8 5,265 - GFF5829 0.26 -1.5 5,358 - GFF5829 0.33 +1.5 5,390 + GFF5829 0.36 +1.6 5,675 + GFF5829 0.58 +0.3 5,675 + GFF5829 0.58 -0.8 5,676 - GFF5829 0.59 -1.4 5,690 + GFF5829 0.60 -1.4 5,690 + GFF5829 0.60 -0.9 5,691 - GFF5829 0.60 +0.9 5,691 - GFF5829 0.60 +0.5 5,691 - GFF5829 0.60 -1.7 5,691 - GFF5829 0.60 -2.5 5,691 - GFF5829 0.60 +0.3 5,741 + GFF5829 0.64 +0.9 5,741 + GFF5829 0.64 -2.4 5,741 + GFF5829 0.64 -0.3 5,742 - GFF5829 0.64 +2.3 5,742 - GFF5829 0.64 -0.7 5,742 - GFF5829 0.64 -2.5 5,742 - GFF5829 0.64 +0.5 5,810 + GFF5829 0.69 +1.9 5,811 - GFF5829 0.69 -1.0 5,896 + GFF5829 0.76 -0.3 5,897 - GFF5829 0.76 -1.5 5,897 - GFF5829 0.76 -0.5
Or see this region's nucleotide sequence