Strain Fitness in Variovorax sp. SCN45 around GFF5757

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
128,800	+				-0.4
128,801	-				-2.1
128,845	+				+1.8
128,845	+				-0.8
128,846	-				-0.0
128,846	-				-1.5
128,891	+				+0.5
128,891	+				+0.2
128,891	+				-1.1
128,891	+				-1.4
128,891	+				-0.9
128,892	-				-0.9
128,892	-				-0.3
128,892	-				-1.1
128,892	-				-1.1
128,892	-				-2.0
128,892	-				+1.0
128,892	-				-2.0
128,892	-				-1.7
128,892	-				-2.0
129,176	+		GFF5755	0.69	-0.3
129,177	-		GFF5755	0.69	-0.6
129,177	-		GFF5755	0.69	-0.2
129,182	+		GFF5755	0.70	+1.2
129,182	+		GFF5755	0.70	+0.6
129,182	+		GFF5755	0.70	-1.2
129,182	+		GFF5755	0.70	-1.4
129,183	-		GFF5755	0.70	-0.2
129,183	-		GFF5755	0.70	-0.5
129,183	-		GFF5755	0.70	-1.9
129,353	-				-0.7
129,353	-				-0.1
129,379	-				+0.7
129,630	+		GFF5756	0.85	-1.7
129,631	-		GFF5756	0.85	-0.1
129,631	-		GFF5756	0.85	-1.7
129,631	-		GFF5756	0.85	+2.2
129,631	-		GFF5756	0.85	+0.2
129,631	-		GFF5756	0.85	+1.2
129,664	-				+1.1
130,115	+		GFF5757	0.31	-2.1
130,115	+		GFF5757	0.31	+1.2
130,115	+		GFF5757	0.31	-3.2
130,116	-		GFF5757	0.31	-2.2
130,116	-		GFF5757	0.31	-1.4
130,116	-		GFF5757	0.31	+1.0
130,116	-		GFF5757	0.31	-0.9
130,429	+		GFF5757	0.55	+0.1
130,429	+		GFF5757	0.55	-0.3
130,429	+		GFF5757	0.55	-1.5
130,430	-		GFF5757	0.55	+1.5
130,496	+		GFF5757	0.60	-0.6
130,497	-		GFF5757	0.60	+0.9
130,497	-		GFF5757	0.60	+0.6
130,497	-		GFF5757	0.60	+0.1
130,497	-		GFF5757	0.60	+1.8
131,006	+				+0.6
131,006	+				+1.0
131,006	+				-1.1
131,006	+				-0.4
131,006	+				+3.2
131,006	+				-3.6
131,006	+				+1.0
131,006	+				-0.1
131,006	+				+0.6
131,006	+				-3.7
131,006	+				+0.7
131,006	+				-1.4
131,006	+				+0.8
131,006	+				-1.7
131,007	-				-2.2
131,007	-				+1.2
131,007	-				+0.1
131,007	-				-1.8
131,007	-				+1.2
131,007	-				-1.6
131,056	+		GFF5758	0.15	-3.7
131,056	+		GFF5758	0.15	-1.2
131,057	-		GFF5758	0.15	-0.4
131,057	-		GFF5758	0.15	+0.7
131,057	-		GFF5758	0.15	-2.9
131,098	+		GFF5758	0.29	-2.2
131,098	+		GFF5758	0.29	+0.4
131,098	+		GFF5758	0.29	+0.6
131,099	-		GFF5758	0.29	-0.1
131,149	+		GFF5758	0.46	-0.6
131,149	+		GFF5758	0.46	-2.2
131,149	+		GFF5758	0.46	-0.9
131,149	+		GFF5758	0.46	-1.6
131,149	+		GFF5758	0.46	-0.2
131,149	+		GFF5758	0.46	-2.5
131,149	+		GFF5758	0.46	-0.7
131,149	+		GFF5758	0.46	-0.1
131,149	+		GFF5758	0.46	+0.5
131,150	-		GFF5758	0.46	+0.9
131,150	-		GFF5758	0.46	-1.0
131,150	-		GFF5758	0.46	+0.9
131,150	-		GFF5758	0.46	-3.2
131,150	-		GFF5758	0.46	-0.2
131,150	-		GFF5758	0.46	+0.9
131,150	-		GFF5758	0.46	-0.1
131,150	-		GFF5758	0.46	+0.2
131,150	-		GFF5758	0.46	-1.8
131,150	-		GFF5758	0.46	-0.1
131,150	-		GFF5758	0.46	+1.6
131,150	-		GFF5758	0.46	+2.2
131,150	-		GFF5758	0.46	+0.6
131,150	-		GFF5758	0.46	-0.6
131,150	-		GFF5758	0.46	-3.1
131,257	+		GFF5758	0.82	-2.2
131,257	+		GFF5758	0.82	-2.1
131,257	+		GFF5758	0.82	+0.5
131,257	+		GFF5758	0.82	-3.1
131,257	+		GFF5758	0.82	+0.2
131,257	+		GFF5758	0.82	+0.4
131,257	+		GFF5758	0.82	+0.2
131,258	-		GFF5758	0.82	-0.7
131,258	-		GFF5758	0.82	+1.0
131,258	-		GFF5758	0.82	+0.3
131,258	-		GFF5758	0.82	-1.7
131,258	-		GFF5758	0.82	-0.8
131,258	-		GFF5758	0.82	+0.1
131,308	+				-2.0
131,308	+				-1.1
131,308	+				-1.2
131,308	+				-1.4
131,308	+				+0.8
131,308	+				-1.4
131,309	-				-1.5
131,313	+				+0.5
131,314	-				+1.8
131,314	-				+1.5
131,323	+				+0.8
131,324	-				-0.8
131,331	+				+0.2
131,333	+				-1.6
131,334	-				-1.8
131,335	+				-3.5
131,335	+				-0.9
131,335	+				-2.0
131,336	-				-1.9
131,336	-				-1.1
131,336	-				-0.3
131,370	-				+2.2
131,370	-				-0.3
131,412	-				+1.1
131,493	+				-0.8
131,493	+				-0.1
131,493	+				-3.2
131,494	-				-1.7
131,494	-				-0.0
131,494	-				+0.8
131,494	-				+1.3
131,494	-				-0.2
131,494	-				-1.0
131,494	-				+0.1
131,494	-				+0.8
131,553	-				-0.9
131,553	-				+3.8
131,559	+				-2.7
131,560	-				-2.1
131,588	-				-2.0
131,593	-				+2.2
131,703	+		GFF5759	0.21	-1.9
131,703	+		GFF5759	0.21	-0.9
131,713	+		GFF5759	0.24	+4.8
131,713	+		GFF5759	0.24	+0.2
131,713	+		GFF5759	0.24	+0.2
131,713	+		GFF5759	0.24	+0.6
131,714	-		GFF5759	0.24	-0.6
131,714	-		GFF5759	0.24	+0.1
131,714	-		GFF5759	0.24	-1.2
131,714	-		GFF5759	0.24	+0.9
131,714	-		GFF5759	0.24	-3.9
131,714	-		GFF5759	0.24	-2.6
131,715	+		GFF5759	0.24	-2.1
131,715	+		GFF5759	0.24	+0.4
131,715	+		GFF5759	0.24	-2.4
131,715	+		GFF5759	0.24	+0.7
131,715	+		GFF5759	0.24	+1.8
131,715	+		GFF5759	0.24	+1.5
131,715	+		GFF5759	0.24	+3.2
131,715	+		GFF5759	0.24	-1.2
131,716	-		GFF5759	0.24	-1.5
131,716	-		GFF5759	0.24	-0.2
131,716	-		GFF5759	0.24	-1.1
131,716	-		GFF5759	0.24	+0.6
131,716	-		GFF5759	0.24	-0.4
131,716	-		GFF5759	0.24	+0.7
131,716	-		GFF5759	0.24	+1.6
131,716	-		GFF5759	0.24	-2.4
131,716	-		GFF5759	0.24	-0.2
131,716	-		GFF5759	0.24	-0.4
131,716	-		GFF5759	0.24	-1.2
131,716	-		GFF5759	0.24	-0.3
131,716	-		GFF5759	0.24	+0.7