Strain Fitness in Variovorax sp. SCN45 around GFF5734

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
107,062	-		GFF5734	0.20	+0.2
107,062	-		GFF5734	0.20	+0.3
107,223	+		GFF5734	0.29	+0.9
108,502	+				-0.1
108,536	+				+0.2
108,536	+				-1.0
108,537	-				+0.6
108,544	+				-1.3
108,545	-				+0.2
108,545	-				-1.8
108,564	-				-0.5
108,564	-				+0.2
108,636	-				+0.6
108,747	-		GFF5735	0.10	+1.2
108,747	-		GFF5735	0.10	+1.2
108,747	-		GFF5735	0.10	+2.5
108,747	-		GFF5735	0.10	-0.4
108,755	+		GFF5735	0.11	-0.1
108,756	-		GFF5735	0.11	-0.1
108,995	+		GFF5735	0.23	-2.4
108,996	-		GFF5735	0.23	-1.5
109,061	+		GFF5735	0.26	+1.8
109,061	+		GFF5735	0.26	-0.4
109,220	+		GFF5735	0.34	-0.4
109,221	-		GFF5735	0.34	+0.5
109,221	-		GFF5735	0.34	-1.2
109,221	-		GFF5735	0.34	-0.4
109,221	-		GFF5735	0.34	-1.2
109,266	-		GFF5735	0.37	-0.2
109,266	-		GFF5735	0.37	-0.6