Strain Fitness in Variovorax sp. SCN45 around GFF5732

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5731 and GFF5732 are separated by 14 nucleotidesGFF5732 and GFF5733 are separated by 150 nucleotides GFF5731 - Methyl-accepting chemotaxis sensor/transducer protein, at 101,513 to 103,114 GFF5731 GFF5732 - Methyl-accepting chemotaxis sensor/transducer protein, at 103,129 to 104,832 GFF5732 GFF5733 - Methyl-accepting chemotaxis sensor/transducer protein, at 104,983 to 106,617 GFF5733 Position (kb) 103 104 105Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 103.112 kb on + strandat 103.321 kb on + strand, within GFF5732at 103.321 kb on + strand, within GFF5732at 103.321 kb on + strand, within GFF5732at 103.703 kb on - strand, within GFF5732at 103.819 kb on + strand, within GFF5732at 105.122 kb on - strandat 105.232 kb on + strand, within GFF5733at 105.443 kb on - strand, within GFF5733at 105.443 kb on - strand, within GFF5733

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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103,112 + -0.7
103,321 + GFF5732 0.11 -1.4
103,321 + GFF5732 0.11 -2.6
103,321 + GFF5732 0.11 +1.9
103,703 - GFF5732 0.34 +0.2
103,819 + GFF5732 0.40 +0.6
105,122 - -0.8
105,232 + GFF5733 0.15 +0.3
105,443 - GFF5733 0.28 -3.8
105,443 - GFF5733 0.28 +0.4

Or see this region's nucleotide sequence