Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5728 and GFF5729 are separated by 16 nucleotides GFF5729 and GFF5730 are separated by 20 nucleotides GFF5730 and GFF5731 are separated by 67 nucleotides
GFF5728 - Methyl-accepting chemotaxis sensor/transducer protein, at 97,717 to 99,282
GFF5728
GFF5729 - Methyl-accepting chemotaxis sensor/transducer protein, at 99,299 to 100,903
GFF5729
GFF5730 - Positive regulator of CheA protein activity (CheW), at 100,924 to 101,445
GFF5730
GFF5731 - Methyl-accepting chemotaxis sensor/transducer protein, at 101,513 to 103,114
GFF5731
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 98.587 kb on - strand, within GFF5728 at 99.392 kb on + strand at 99.392 kb on + strand at 99.392 kb on + strand at 99.393 kb on - strand at 99.393 kb on - strand at 99.576 kb on - strand, within GFF5729 at 99.576 kb on - strand, within GFF5729 at 99.629 kb on + strand, within GFF5729 at 99.629 kb on + strand, within GFF5729 at 99.629 kb on + strand, within GFF5729 at 99.629 kb on + strand, within GFF5729 at 99.629 kb on + strand, within GFF5729 at 99.629 kb on + strand, within GFF5729 at 99.629 kb on + strand, within GFF5729 at 101.690 kb on + strand, within GFF5731 at 101.691 kb on - strand, within GFF5731 at 101.691 kb on - strand, within GFF5731 at 101.888 kb on + strand, within GFF5731
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 98,587 - GFF5728 0.56 -0.1 99,392 + +0.6 99,392 + +0.9 99,392 + -0.8 99,393 - +1.5 99,393 - -1.1 99,576 - GFF5729 0.17 -1.3 99,576 - GFF5729 0.17 -0.4 99,629 + GFF5729 0.21 -1.0 99,629 + GFF5729 0.21 -2.2 99,629 + GFF5729 0.21 -2.2 99,629 + GFF5729 0.21 -1.5 99,629 + GFF5729 0.21 -1.4 99,629 + GFF5729 0.21 +0.3 99,629 + GFF5729 0.21 -1.5 101,690 + GFF5731 0.11 -2.0 101,691 - GFF5731 0.11 +2.0 101,691 - GFF5731 0.11 -1.9 101,888 + GFF5731 0.23 +4.6
Or see this region's nucleotide sequence