Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5720 and GFF5721 overlap by 1 nucleotides GFF5721 and GFF5722 are separated by 2 nucleotides GFF5722 and GFF5723 are separated by 10 nucleotides
GFF5720 - Flagellar basal-body rod protein FlgG, at 89,631 to 90,413
GFF5720
GFF5721 - Flagellar L-ring protein FlgH, at 90,413 to 91,120
GFF5721
GFF5722 - Flagellar P-ring protein FlgI, at 91,123 to 92,331
GFF5722
GFF5723 - Flagellar protein FlgJ [peptidoglycan hydrolase], at 92,342 to 93,358
GFF5723
Position (kb) 91
92
93 Strain fitness (log2 ratio) -2
-1
0
1
2 at 90.361 kb on - strand at 90.951 kb on - strand, within GFF5721 at 90.951 kb on - strand, within GFF5721 at 90.951 kb on - strand, within GFF5721 at 91.041 kb on - strand, within GFF5721 at 91.055 kb on + strand at 91.640 kb on - strand, within GFF5722 at 91.640 kb on - strand, within GFF5722 at 92.604 kb on - strand, within GFF5723 at 92.858 kb on + strand, within GFF5723 at 92.858 kb on + strand, within GFF5723 at 92.859 kb on - strand, within GFF5723 at 92.859 kb on - strand, within GFF5723 at 92.864 kb on + strand, within GFF5723 at 93.131 kb on + strand, within GFF5723 at 93.132 kb on - strand, within GFF5723 at 93.132 kb on - strand, within GFF5723 at 93.177 kb on - strand, within GFF5723 at 93.185 kb on + strand, within GFF5723 at 93.186 kb on - strand, within GFF5723 at 93.300 kb on - strand at 93.317 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 90,361 - -1.7 90,951 - GFF5721 0.76 +0.4 90,951 - GFF5721 0.76 +1.2 90,951 - GFF5721 0.76 -1.0 91,041 - GFF5721 0.89 -2.3 91,055 + -1.3 91,640 - GFF5722 0.43 -0.9 91,640 - GFF5722 0.43 -0.4 92,604 - GFF5723 0.26 +1.9 92,858 + GFF5723 0.51 +2.2 92,858 + GFF5723 0.51 +0.5 92,859 - GFF5723 0.51 -0.8 92,859 - GFF5723 0.51 -2.1 92,864 + GFF5723 0.51 -1.5 93,131 + GFF5723 0.78 -1.0 93,132 - GFF5723 0.78 -0.2 93,132 - GFF5723 0.78 -1.6 93,177 - GFF5723 0.82 +0.3 93,185 + GFF5723 0.83 +2.1 93,186 - GFF5723 0.83 -1.2 93,300 - -1.9 93,317 + +1.0
Or see this region's nucleotide sequence