Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5637 and GFF5638 are separated by 34 nucleotides GFF5638 and GFF5639 overlap by 4 nucleotides GFF5639 and GFF5640 are separated by 123 nucleotides
GFF5637 - Molybdenum ABC transporter ATP-binding protein ModC, at 12,944 to 13,732
GFF5637
GFF5638 - no description, at 13,767 to 14,048
GFF5638
GFF5639 - Death on curing protein, Doc toxin, at 14,045 to 14,359
GFF5639
GFF5640 - Putative formate dehydrogenase oxidoreductase protein, at 14,483 to 16,831
GFF5640
Position (kb) 14
15 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 13.139 kb on + strand, within GFF5637 at 13.139 kb on + strand, within GFF5637 at 13.139 kb on + strand, within GFF5637 at 13.140 kb on - strand, within GFF5637 at 13.140 kb on - strand, within GFF5637 at 13.140 kb on - strand, within GFF5637 at 13.140 kb on - strand, within GFF5637 at 13.191 kb on - strand, within GFF5637 at 13.191 kb on - strand, within GFF5637 at 13.205 kb on + strand, within GFF5637 at 13.205 kb on + strand, within GFF5637 at 13.205 kb on + strand, within GFF5637 at 13.205 kb on + strand, within GFF5637 at 13.205 kb on + strand, within GFF5637 at 13.205 kb on + strand, within GFF5637 at 13.206 kb on - strand, within GFF5637 at 13.206 kb on - strand, within GFF5637 at 13.206 kb on - strand, within GFF5637 at 13.206 kb on - strand, within GFF5637 at 13.225 kb on + strand, within GFF5637 at 13.225 kb on + strand, within GFF5637 at 13.225 kb on + strand, within GFF5637 at 13.225 kb on + strand, within GFF5637 at 13.226 kb on - strand, within GFF5637 at 13.226 kb on - strand, within GFF5637 at 13.226 kb on - strand, within GFF5637 at 13.580 kb on + strand, within GFF5637 at 13.580 kb on + strand, within GFF5637 at 13.580 kb on + strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.741 kb on + strand at 13.749 kb on - strand at 13.756 kb on - strand at 13.965 kb on + strand, within GFF5638 at 14.051 kb on + strand at 14.051 kb on + strand at 14.051 kb on + strand at 14.052 kb on - strand at 14.052 kb on - strand at 14.052 kb on - strand at 14.052 kb on - strand at 14.163 kb on + strand, within GFF5639 at 14.163 kb on + strand, within GFF5639 at 14.163 kb on + strand, within GFF5639 at 14.164 kb on - strand, within GFF5639 at 14.164 kb on - strand, within GFF5639 at 14.164 kb on - strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.277 kb on - strand, within GFF5639 at 14.277 kb on - strand, within GFF5639 at 14.277 kb on - strand, within GFF5639 at 14.277 kb on - strand, within GFF5639 at 14.295 kb on + strand, within GFF5639 at 14.295 kb on + strand, within GFF5639 at 14.295 kb on + strand, within GFF5639 at 14.296 kb on - strand, within GFF5639 at 14.351 kb on + strand at 14.351 kb on + strand at 14.351 kb on + strand at 14.352 kb on - strand at 14.352 kb on - strand at 14.352 kb on - strand at 14.434 kb on + strand at 14.434 kb on + strand at 14.435 kb on - strand at 14.507 kb on + strand at 14.507 kb on + strand at 14.508 kb on - strand at 14.508 kb on - strand at 14.508 kb on - strand at 14.828 kb on + strand, within GFF5640 at 14.828 kb on + strand, within GFF5640 at 14.828 kb on + strand, within GFF5640 at 14.828 kb on + strand, within GFF5640 at 14.829 kb on - strand, within GFF5640 at 14.829 kb on - strand, within GFF5640 at 14.829 kb on - strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.972 kb on + strand, within GFF5640 at 14.972 kb on + strand, within GFF5640 at 14.972 kb on + strand, within GFF5640 at 14.972 kb on + strand, within GFF5640 at 14.973 kb on - strand, within GFF5640 at 14.973 kb on - strand, within GFF5640 at 14.993 kb on + strand, within GFF5640 at 14.993 kb on + strand, within GFF5640 at 15.308 kb on + strand, within GFF5640 at 15.308 kb on + strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 13,139 + GFF5637 0.25 +0.3 13,139 + GFF5637 0.25 -0.4 13,139 + GFF5637 0.25 +1.0 13,140 - GFF5637 0.25 -2.4 13,140 - GFF5637 0.25 -0.4 13,140 - GFF5637 0.25 +0.8 13,140 - GFF5637 0.25 -0.4 13,191 - GFF5637 0.31 -1.9 13,191 - GFF5637 0.31 +2.2 13,205 + GFF5637 0.33 -0.1 13,205 + GFF5637 0.33 -3.2 13,205 + GFF5637 0.33 +0.7 13,205 + GFF5637 0.33 +1.2 13,205 + GFF5637 0.33 -0.3 13,205 + GFF5637 0.33 -1.6 13,206 - GFF5637 0.33 +1.9 13,206 - GFF5637 0.33 +0.6 13,206 - GFF5637 0.33 -1.0 13,206 - GFF5637 0.33 +1.4 13,225 + GFF5637 0.36 -2.2 13,225 + GFF5637 0.36 +1.2 13,225 + GFF5637 0.36 -0.9 13,225 + GFF5637 0.36 +0.5 13,226 - GFF5637 0.36 -0.7 13,226 - GFF5637 0.36 -1.8 13,226 - GFF5637 0.36 -0.2 13,580 + GFF5637 0.81 +2.6 13,580 + GFF5637 0.81 -2.0 13,580 + GFF5637 0.81 +1.7 13,581 - GFF5637 0.81 -0.3 13,581 - GFF5637 0.81 -0.1 13,581 - GFF5637 0.81 -1.4 13,581 - GFF5637 0.81 +0.0 13,581 - GFF5637 0.81 -1.2 13,741 + -1.4 13,749 - -1.4 13,756 - -1.8 13,965 + GFF5638 0.70 +1.2 14,051 + -1.7 14,051 + +0.5 14,051 + +0.1 14,052 - -0.2 14,052 - +1.1 14,052 - -0.4 14,052 - -1.6 14,163 + GFF5639 0.37 -0.2 14,163 + GFF5639 0.37 -2.6 14,163 + GFF5639 0.37 +0.4 14,164 - GFF5639 0.38 -0.4 14,164 - GFF5639 0.38 -3.2 14,164 - GFF5639 0.38 +0.4 14,276 + GFF5639 0.73 -0.8 14,276 + GFF5639 0.73 -0.9 14,276 + GFF5639 0.73 -1.3 14,276 + GFF5639 0.73 -0.3 14,276 + GFF5639 0.73 -1.8 14,276 + GFF5639 0.73 -1.0 14,276 + GFF5639 0.73 -0.1 14,277 - GFF5639 0.74 -0.2 14,277 - GFF5639 0.74 +2.1 14,277 - GFF5639 0.74 -0.9 14,277 - GFF5639 0.74 +1.7 14,295 + GFF5639 0.79 -1.7 14,295 + GFF5639 0.79 -0.8 14,295 + GFF5639 0.79 -1.5 14,296 - GFF5639 0.80 -0.5 14,351 + +0.8 14,351 + -1.9 14,351 + -0.1 14,352 - -0.5 14,352 - -1.8 14,352 - +0.2 14,434 + -2.6 14,434 + +0.4 14,435 - +0.9 14,507 + -0.9 14,507 + -1.7 14,508 - -1.9 14,508 - -0.1 14,508 - -0.3 14,828 + GFF5640 0.15 +0.6 14,828 + GFF5640 0.15 -2.3 14,828 + GFF5640 0.15 -1.8 14,828 + GFF5640 0.15 -2.4 14,829 - GFF5640 0.15 -1.8 14,829 - GFF5640 0.15 +0.3 14,829 - GFF5640 0.15 -0.0 14,849 + GFF5640 0.16 +1.1 14,849 + GFF5640 0.16 -1.1 14,849 + GFF5640 0.16 -2.2 14,849 + GFF5640 0.16 -1.2 14,849 + GFF5640 0.16 +1.1 14,849 + GFF5640 0.16 -0.8 14,849 + GFF5640 0.16 +0.3 14,849 + GFF5640 0.16 -1.1 14,849 + GFF5640 0.16 -0.4 14,849 + GFF5640 0.16 -2.7 14,849 + GFF5640 0.16 -0.9 14,849 + GFF5640 0.16 -0.1 14,849 + GFF5640 0.16 +2.1 14,849 + GFF5640 0.16 -0.3 14,849 + GFF5640 0.16 -1.9 14,849 + GFF5640 0.16 -0.9 14,849 + GFF5640 0.16 +0.6 14,849 + GFF5640 0.16 -0.0 14,849 + GFF5640 0.16 -1.6 14,850 - GFF5640 0.16 +2.2 14,850 - GFF5640 0.16 +2.0 14,850 - GFF5640 0.16 +0.9 14,850 - GFF5640 0.16 +1.1 14,850 - GFF5640 0.16 +0.4 14,850 - GFF5640 0.16 -0.8 14,850 - GFF5640 0.16 -0.4 14,850 - GFF5640 0.16 -1.1 14,850 - GFF5640 0.16 -3.1 14,850 - GFF5640 0.16 +2.2 14,850 - GFF5640 0.16 -2.2 14,850 - GFF5640 0.16 +0.1 14,850 - GFF5640 0.16 +0.5 14,933 + GFF5640 0.19 +0.2 14,933 + GFF5640 0.19 -0.2 14,933 + GFF5640 0.19 -1.5 14,933 + GFF5640 0.19 +0.8 14,933 + GFF5640 0.19 -1.5 14,933 + GFF5640 0.19 -0.8 14,933 + GFF5640 0.19 +0.5 14,933 + GFF5640 0.19 +0.8 14,933 + GFF5640 0.19 -2.2 14,934 - GFF5640 0.19 -1.6 14,934 - GFF5640 0.19 -1.7 14,934 - GFF5640 0.19 +0.7 14,934 - GFF5640 0.19 +0.6 14,934 - GFF5640 0.19 -2.3 14,934 - GFF5640 0.19 -0.9 14,934 - GFF5640 0.19 -2.8 14,972 + GFF5640 0.21 +0.4 14,972 + GFF5640 0.21 +0.7 14,972 + GFF5640 0.21 +0.6 14,972 + GFF5640 0.21 -4.2 14,973 - GFF5640 0.21 -2.4 14,973 - GFF5640 0.21 -3.3 14,993 + GFF5640 0.22 +0.1 14,993 + GFF5640 0.22 -1.1 15,308 + GFF5640 0.35 -3.5 15,308 + GFF5640 0.35 +1.4 15,309 - GFF5640 0.35 +0.6 15,309 - GFF5640 0.35 -0.4 15,309 - GFF5640 0.35 +2.5 15,309 - GFF5640 0.35 -0.2 15,309 - GFF5640 0.35 -3.9 15,309 - GFF5640 0.35 +1.1
Or see this region's nucleotide sequence