Strain Fitness in Variovorax sp. SCN45 around GFF5624

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5623 and GFF5624 are separated by 5 nucleotidesGFF5624 and GFF5625 are separated by 93 nucleotidesGFF5625 and GFF5626 are separated by 3 nucleotides GFF5623 - Metal-dependent amidase/aminoacylase/carboxypeptidase, at 630 to 1,817 GFF5623 GFF5624 - Diaminopropionate ammonia-lyase (EC 4.3.1.15), at 1,823 to 3,052 GFF5624 GFF5625 - Putative transmembrane protein, at 3,146 to 3,775 GFF5625 GFF5626 - Patatin, at 3,779 to 4,990 GFF5626 Position (kb) 1 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 1.101 kb on + strand, within GFF5623at 1.101 kb on + strand, within GFF5623at 1.101 kb on + strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.404 kb on + strand, within GFF5623at 1.404 kb on + strand, within GFF5623at 1.404 kb on + strand, within GFF5623at 1.404 kb on + strand, within GFF5623at 1.405 kb on - strand, within GFF5623at 1.405 kb on - strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.722 kb on + strandat 1.722 kb on + strandat 1.722 kb on + strandat 1.722 kb on + strandat 1.723 kb on - strandat 1.761 kb on + strandat 1.761 kb on + strandat 1.762 kb on - strandat 1.762 kb on - strandat 1.860 kb on - strandat 1.860 kb on - strandat 1.860 kb on - strandat 2.327 kb on + strand, within GFF5624at 2.327 kb on + strand, within GFF5624at 2.327 kb on + strand, within GFF5624at 2.327 kb on + strand, within GFF5624at 2.327 kb on + strand, within GFF5624at 2.327 kb on + strand, within GFF5624at 2.399 kb on + strand, within GFF5624at 2.399 kb on + strand, within GFF5624at 2.399 kb on + strand, within GFF5624at 2.399 kb on + strand, within GFF5624at 2.400 kb on - strand, within GFF5624at 2.400 kb on - strand, within GFF5624at 2.400 kb on - strand, within GFF5624at 2.400 kb on - strand, within GFF5624at 2.400 kb on - strand, within GFF5624at 2.400 kb on - strand, within GFF5624at 2.408 kb on + strand, within GFF5624at 2.409 kb on - strand, within GFF5624at 2.571 kb on - strand, within GFF5624at 2.571 kb on - strand, within GFF5624at 2.571 kb on - strand, within GFF5624at 2.940 kb on + strandat 2.947 kb on - strandat 2.973 kb on - strandat 2.973 kb on - strandat 3.102 kb on + strandat 3.103 kb on - strandat 3.338 kb on + strand, within GFF5625at 3.338 kb on + strand, within GFF5625at 3.338 kb on + strand, within GFF5625at 3.338 kb on + strand, within GFF5625at 3.338 kb on + strand, within GFF5625at 3.338 kb on + strand, within GFF5625at 3.338 kb on + strand, within GFF5625at 3.339 kb on - strand, within GFF5625at 3.339 kb on - strand, within GFF5625at 3.339 kb on - strand, within GFF5625at 3.339 kb on - strand, within GFF5625at 3.374 kb on + strand, within GFF5625at 3.374 kb on + strand, within GFF5625at 3.374 kb on + strand, within GFF5625at 3.374 kb on + strand, within GFF5625at 3.375 kb on - strand, within GFF5625at 3.375 kb on - strand, within GFF5625at 3.375 kb on - strand, within GFF5625at 3.375 kb on - strand, within GFF5625at 3.375 kb on - strand, within GFF5625at 3.375 kb on - strand, within GFF5625at 3.375 kb on - strand, within GFF5625at 3.425 kb on + strand, within GFF5625at 3.425 kb on + strand, within GFF5625at 3.425 kb on + strand, within GFF5625at 3.425 kb on + strand, within GFF5625at 3.425 kb on + strand, within GFF5625at 3.425 kb on + strand, within GFF5625at 3.426 kb on - strand, within GFF5625at 3.426 kb on - strand, within GFF5625at 3.524 kb on + strand, within GFF5625at 3.773 kb on + strandat 3.773 kb on + strandat 3.773 kb on + strandat 3.773 kb on + strandat 3.774 kb on - strandat 3.774 kb on - strandat 3.774 kb on - strandat 3.774 kb on - strandat 3.774 kb on - strandat 3.774 kb on - strandat 3.780 kb on + strandat 3.882 kb on + strandat 3.882 kb on + strandat 3.883 kb on - strandat 3.903 kb on + strand, within GFF5626at 3.903 kb on + strand, within GFF5626at 3.903 kb on + strand, within GFF5626at 3.903 kb on + strand, within GFF5626at 3.904 kb on - strand, within GFF5626at 3.904 kb on - strand, within GFF5626at 3.904 kb on - strand, within GFF5626at 3.904 kb on - strand, within GFF5626at 3.904 kb on - strand, within GFF5626at 3.904 kb on - strand, within GFF5626at 3.961 kb on - strand, within GFF5626at 3.961 kb on - strand, within GFF5626

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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944 + GFF5623 0.26 +0.2
944 + GFF5623 0.26 -0.6
944 + GFF5623 0.26 -0.9
944 + GFF5623 0.26 -0.7
944 + GFF5623 0.26 +0.2
944 + GFF5623 0.26 -0.1
944 + GFF5623 0.26 +0.2
944 + GFF5623 0.26 -3.0
944 + GFF5623 0.26 +0.0
944 + GFF5623 0.26 -0.6
944 + GFF5623 0.26 -0.9
944 + GFF5623 0.26 -0.3
944 + GFF5623 0.26 +0.9
944 + GFF5623 0.26 -3.1
944 + GFF5623 0.26 -0.9
944 + GFF5623 0.26 -0.6
944 + GFF5623 0.26 +0.6
944 + GFF5623 0.26 +0.7
944 + GFF5623 0.26 +0.6
944 + GFF5623 0.26 -1.7
945 - GFF5623 0.27 -0.2
945 - GFF5623 0.27 -0.6
945 - GFF5623 0.27 -0.9
945 - GFF5623 0.27 -0.4
945 - GFF5623 0.27 +0.9
945 - GFF5623 0.27 +1.1
945 - GFF5623 0.27 +0.9
945 - GFF5623 0.27 -2.5
945 - GFF5623 0.27 +1.9
945 - GFF5623 0.27 -0.1
945 - GFF5623 0.27 -0.4
945 - GFF5623 0.27 -0.2
1,101 + GFF5623 0.40 -1.7
1,101 + GFF5623 0.40 -0.4
1,101 + GFF5623 0.40 +0.9
1,102 - GFF5623 0.40 +0.2
1,102 - GFF5623 0.40 +0.9
1,102 - GFF5623 0.40 -0.8
1,102 - GFF5623 0.40 -0.6
1,102 - GFF5623 0.40 -0.2
1,102 - GFF5623 0.40 -2.4
1,404 + GFF5623 0.65 -1.5
1,404 + GFF5623 0.65 +0.5
1,404 + GFF5623 0.65 +1.9
1,404 + GFF5623 0.65 -1.8
1,405 - GFF5623 0.65 -0.8
1,405 - GFF5623 0.65 -0.1
1,497 + GFF5623 0.73 +2.6
1,497 + GFF5623 0.73 +0.2
1,497 + GFF5623 0.73 -0.6
1,497 + GFF5623 0.73 +0.8
1,497 + GFF5623 0.73 -1.9
1,498 - GFF5623 0.73 -1.3
1,498 - GFF5623 0.73 -0.3
1,498 - GFF5623 0.73 +1.1
1,498 - GFF5623 0.73 -0.0
1,498 - GFF5623 0.73 -1.6
1,498 - GFF5623 0.73 -0.6
1,498 - GFF5623 0.73 +1.0
1,722 + +1.1
1,722 + -0.4
1,722 + -2.1
1,722 + -2.9
1,723 - -2.3
1,761 + -1.8
1,761 + +1.9
1,762 - +0.3
1,762 - -0.2
1,860 - -1.4
1,860 - -0.4
1,860 - -2.2
2,327 + GFF5624 0.41 -1.8
2,327 + GFF5624 0.41 -0.6
2,327 + GFF5624 0.41 +1.1
2,327 + GFF5624 0.41 -0.1
2,327 + GFF5624 0.41 -2.5
2,327 + GFF5624 0.41 -1.5
2,399 + GFF5624 0.47 +0.5
2,399 + GFF5624 0.47 -1.5
2,399 + GFF5624 0.47 -1.3
2,399 + GFF5624 0.47 +1.2
2,400 - GFF5624 0.47 +0.4
2,400 - GFF5624 0.47 -1.0
2,400 - GFF5624 0.47 -2.4
2,400 - GFF5624 0.47 +1.8
2,400 - GFF5624 0.47 +2.1
2,400 - GFF5624 0.47 -0.7
2,408 + GFF5624 0.48 -2.1
2,409 - GFF5624 0.48 +0.2
2,571 - GFF5624 0.61 -1.4
2,571 - GFF5624 0.61 -0.9
2,571 - GFF5624 0.61 -1.4
2,940 + -0.4
2,947 - +0.2
2,973 - -0.8
2,973 - +0.2
3,102 + -2.3
3,103 - +0.8
3,338 + GFF5625 0.30 +1.5
3,338 + GFF5625 0.30 -0.5
3,338 + GFF5625 0.30 +0.3
3,338 + GFF5625 0.30 +0.9
3,338 + GFF5625 0.30 -0.8
3,338 + GFF5625 0.30 -0.5
3,338 + GFF5625 0.30 -0.1
3,339 - GFF5625 0.31 -2.6
3,339 - GFF5625 0.31 -1.7
3,339 - GFF5625 0.31 -2.1
3,339 - GFF5625 0.31 +1.8
3,374 + GFF5625 0.36 +0.4
3,374 + GFF5625 0.36 -1.1
3,374 + GFF5625 0.36 -1.0
3,374 + GFF5625 0.36 -0.5
3,375 - GFF5625 0.36 -1.9
3,375 - GFF5625 0.36 +0.0
3,375 - GFF5625 0.36 -0.3
3,375 - GFF5625 0.36 -0.3
3,375 - GFF5625 0.36 -2.1
3,375 - GFF5625 0.36 +0.6
3,375 - GFF5625 0.36 +1.8
3,425 + GFF5625 0.44 -0.1
3,425 + GFF5625 0.44 +1.7
3,425 + GFF5625 0.44 -1.2
3,425 + GFF5625 0.44 -2.0
3,425 + GFF5625 0.44 +1.1
3,425 + GFF5625 0.44 -0.6
3,426 - GFF5625 0.44 -0.9
3,426 - GFF5625 0.44 -0.1
3,524 + GFF5625 0.60 +1.3
3,773 + -0.4
3,773 + -2.1
3,773 + -1.1
3,773 + +0.6
3,774 - +0.0
3,774 - -0.4
3,774 - -1.6
3,774 - -2.2
3,774 - -1.1
3,774 - -1.2
3,780 + +0.6
3,882 + -1.5
3,882 + -2.9
3,883 - -2.4
3,903 + GFF5626 0.10 -1.9
3,903 + GFF5626 0.10 -0.1
3,903 + GFF5626 0.10 +3.3
3,903 + GFF5626 0.10 +0.7
3,904 - GFF5626 0.10 -0.9
3,904 - GFF5626 0.10 +1.1
3,904 - GFF5626 0.10 -0.4
3,904 - GFF5626 0.10 -0.5
3,904 - GFF5626 0.10 +0.3
3,904 - GFF5626 0.10 -1.7
3,961 - GFF5626 0.15 -1.1
3,961 - GFF5626 0.15 -1.0

Or see this region's nucleotide sequence