Strain Fitness in Variovorax sp. SCN45 around GFF5547

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5545 and GFF5546 are separated by 45 nucleotidesGFF5546 and GFF5547 overlap by 4 nucleotidesGFF5547 and GFF5548 are separated by 14 nucleotides GFF5545 - Pyrrolidone-carboxylate peptidase (EC 3.4.19.3), at 173,088 to 173,771 GFF5545 GFF5546 - Lactam utilization protein LamB, at 173,817 to 174,584 GFF5546 GFF5547 - Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) / Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54), at 174,581 to 176,173 GFF5547 GFF5548 - Urea carboxylase (EC 6.3.4.6) without Allophanate hydrolase 2 domains, at 176,188 to 177,927 GFF5548 Position (kb) 174 175 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 173.631 kb on + strand, within GFF5545at 173.632 kb on - strand, within GFF5545at 173.632 kb on - strand, within GFF5545at 173.632 kb on - strand, within GFF5545at 173.632 kb on - strand, within GFF5545at 173.632 kb on - strand, within GFF5545at 174.009 kb on + strand, within GFF5546at 174.010 kb on - strand, within GFF5546at 174.081 kb on + strand, within GFF5546at 174.081 kb on + strand, within GFF5546at 174.081 kb on + strand, within GFF5546at 174.081 kb on + strand, within GFF5546at 174.082 kb on - strand, within GFF5546at 174.082 kb on - strand, within GFF5546at 174.082 kb on - strand, within GFF5546at 174.136 kb on - strand, within GFF5546at 174.136 kb on - strand, within GFF5546at 174.159 kb on + strand, within GFF5546at 174.159 kb on + strand, within GFF5546at 174.159 kb on + strand, within GFF5546at 174.159 kb on + strand, within GFF5546at 174.159 kb on + strand, within GFF5546at 174.159 kb on + strand, within GFF5546at 174.159 kb on + strand, within GFF5546at 174.159 kb on + strand, within GFF5546at 174.159 kb on + strand, within GFF5546at 174.159 kb on + strand, within GFF5546at 174.160 kb on - strand, within GFF5546at 174.160 kb on - strand, within GFF5546at 174.160 kb on - strand, within GFF5546at 174.160 kb on - strand, within GFF5546at 174.160 kb on - strand, within GFF5546at 174.325 kb on - strand, within GFF5546at 174.325 kb on - strand, within GFF5546at 174.325 kb on - strand, within GFF5546at 174.843 kb on - strand, within GFF5547at 174.926 kb on + strand, within GFF5547at 174.926 kb on + strand, within GFF5547at 174.927 kb on - strand, within GFF5547at 174.927 kb on - strand, within GFF5547at 174.927 kb on - strand, within GFF5547at 174.927 kb on - strand, within GFF5547at 174.965 kb on + strand, within GFF5547at 174.965 kb on + strand, within GFF5547at 174.966 kb on - strand, within GFF5547at 174.966 kb on - strand, within GFF5547at 174.966 kb on - strand, within GFF5547at 175.070 kb on + strand, within GFF5547at 175.071 kb on - strand, within GFF5547at 175.439 kb on + strand, within GFF5547at 175.440 kb on - strand, within GFF5547at 175.440 kb on - strand, within GFF5547at 175.440 kb on - strand, within GFF5547at 175.582 kb on - strand, within GFF5547at 175.619 kb on + strand, within GFF5547at 175.619 kb on + strand, within GFF5547at 175.619 kb on + strand, within GFF5547at 175.619 kb on + strand, within GFF5547at 175.619 kb on + strand, within GFF5547at 175.619 kb on + strand, within GFF5547at 175.619 kb on + strand, within GFF5547at 175.619 kb on + strand, within GFF5547at 175.619 kb on + strand, within GFF5547at 175.619 kb on + strand, within GFF5547at 175.620 kb on - strand, within GFF5547at 175.620 kb on - strand, within GFF5547at 175.620 kb on - strand, within GFF5547at 175.620 kb on - strand, within GFF5547at 175.620 kb on - strand, within GFF5547at 175.620 kb on - strand, within GFF5547at 175.620 kb on - strand, within GFF5547at 175.620 kb on - strand, within GFF5547at 175.620 kb on - strand, within GFF5547at 175.620 kb on - strand, within GFF5547at 175.620 kb on - strand, within GFF5547at 175.620 kb on - strand, within GFF5547at 175.620 kb on - strand, within GFF5547at 175.783 kb on + strand, within GFF5547at 175.783 kb on + strand, within GFF5547at 175.784 kb on - strand, within GFF5547at 175.784 kb on - strand, within GFF5547at 176.061 kb on - strandat 176.254 kb on + strandat 176.254 kb on + strandat 176.255 kb on - strandat 176.255 kb on - strandat 176.278 kb on + strandat 176.329 kb on + strandat 176.329 kb on + strandat 176.329 kb on + strandat 176.330 kb on - strandat 176.330 kb on - strandat 176.330 kb on - strandat 176.330 kb on - strandat 176.330 kb on - strandat 176.358 kb on + strandat 176.359 kb on - strandat 176.359 kb on - strandat 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.362 kb on + strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.363 kb on - strand, within GFF5548at 176.429 kb on - strand, within GFF5548at 176.725 kb on + strand, within GFF5548at 176.725 kb on + strand, within GFF5548at 176.725 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.776 kb on + strand, within GFF5548at 176.777 kb on - strand, within GFF5548at 176.777 kb on - strand, within GFF5548at 176.777 kb on - strand, within GFF5548at 176.777 kb on - strand, within GFF5548at 176.777 kb on - strand, within GFF5548at 176.777 kb on - strand, within GFF5548at 176.777 kb on - strand, within GFF5548at 176.777 kb on - strand, within GFF5548at 176.777 kb on - strand, within GFF5548at 176.777 kb on - strand, within GFF5548at 176.777 kb on - strand, within GFF5548at 176.777 kb on - strand, within GFF5548at 176.777 kb on - strand, within GFF5548at 176.777 kb on - strand, within GFF5548at 176.986 kb on + strand, within GFF5548at 176.987 kb on - strand, within GFF5548at 176.987 kb on - strand, within GFF5548at 176.987 kb on - strand, within GFF5548at 176.988 kb on + strand, within GFF5548at 176.989 kb on - strand, within GFF5548at 176.989 kb on - strand, within GFF5548at 177.159 kb on + strand, within GFF5548

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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173,631 + GFF5545 0.79 -2.5
173,632 - GFF5545 0.80 -1.5
173,632 - GFF5545 0.80 +0.4
173,632 - GFF5545 0.80 +2.9
173,632 - GFF5545 0.80 -1.1
173,632 - GFF5545 0.80 -0.5
174,009 + GFF5546 0.25 -0.2
174,010 - GFF5546 0.25 +0.2
174,081 + GFF5546 0.34 -1.9
174,081 + GFF5546 0.34 -0.9
174,081 + GFF5546 0.34 -0.9
174,081 + GFF5546 0.34 +0.2
174,082 - GFF5546 0.35 -0.3
174,082 - GFF5546 0.35 -1.9
174,082 - GFF5546 0.35 +0.3
174,136 - GFF5546 0.42 +0.0
174,136 - GFF5546 0.42 +0.5
174,159 + GFF5546 0.45 -2.0
174,159 + GFF5546 0.45 +0.4
174,159 + GFF5546 0.45 +1.2
174,159 + GFF5546 0.45 -0.9
174,159 + GFF5546 0.45 +0.2
174,159 + GFF5546 0.45 -0.6
174,159 + GFF5546 0.45 +0.9
174,159 + GFF5546 0.45 -0.5
174,159 + GFF5546 0.45 +0.9
174,159 + GFF5546 0.45 -0.8
174,160 - GFF5546 0.45 -0.6
174,160 - GFF5546 0.45 -0.9
174,160 - GFF5546 0.45 -1.2
174,160 - GFF5546 0.45 +0.3
174,160 - GFF5546 0.45 +0.4
174,325 - GFF5546 0.66 -2.1
174,325 - GFF5546 0.66 -0.4
174,325 - GFF5546 0.66 +0.6
174,843 - GFF5547 0.16 -1.7
174,926 + GFF5547 0.22 +1.2
174,926 + GFF5547 0.22 +0.6
174,927 - GFF5547 0.22 -0.4
174,927 - GFF5547 0.22 -1.1
174,927 - GFF5547 0.22 -1.1
174,927 - GFF5547 0.22 -2.5
174,965 + GFF5547 0.24 -0.9
174,965 + GFF5547 0.24 -1.7
174,966 - GFF5547 0.24 +0.2
174,966 - GFF5547 0.24 -0.6
174,966 - GFF5547 0.24 -1.0
175,070 + GFF5547 0.31 -1.1
175,071 - GFF5547 0.31 -0.3
175,439 + GFF5547 0.54 -1.1
175,440 - GFF5547 0.54 -0.9
175,440 - GFF5547 0.54 +1.0
175,440 - GFF5547 0.54 -3.1
175,582 - GFF5547 0.63 -1.5
175,619 + GFF5547 0.65 -0.9
175,619 + GFF5547 0.65 -1.9
175,619 + GFF5547 0.65 -3.3
175,619 + GFF5547 0.65 -0.1
175,619 + GFF5547 0.65 -0.3
175,619 + GFF5547 0.65 -3.1
175,619 + GFF5547 0.65 +0.2
175,619 + GFF5547 0.65 +1.6
175,619 + GFF5547 0.65 -2.5
175,619 + GFF5547 0.65 -0.6
175,620 - GFF5547 0.65 -3.1
175,620 - GFF5547 0.65 -0.8
175,620 - GFF5547 0.65 -1.8
175,620 - GFF5547 0.65 -2.7
175,620 - GFF5547 0.65 -2.0
175,620 - GFF5547 0.65 -0.3
175,620 - GFF5547 0.65 -0.9
175,620 - GFF5547 0.65 +0.5
175,620 - GFF5547 0.65 -0.1
175,620 - GFF5547 0.65 -0.8
175,620 - GFF5547 0.65 -1.1
175,620 - GFF5547 0.65 -0.1
175,620 - GFF5547 0.65 -0.7
175,783 + GFF5547 0.75 -2.2
175,783 + GFF5547 0.75 +0.9
175,784 - GFF5547 0.76 -1.0
175,784 - GFF5547 0.76 -1.1
176,061 - -1.3
176,254 + +1.0
176,254 + -1.9
176,255 - -0.8
176,255 - -1.6
176,278 + -1.4
176,329 + -1.9
176,329 + -2.5
176,329 + -3.1
176,330 - -0.5
176,330 - -3.5
176,330 - -2.2
176,330 - -1.2
176,330 - -3.3
176,358 + -0.4
176,359 - -1.7
176,359 - -1.5
176,362 + GFF5548 0.10 -1.6
176,362 + GFF5548 0.10 -0.8
176,362 + GFF5548 0.10 -1.4
176,362 + GFF5548 0.10 -1.0
176,362 + GFF5548 0.10 -1.1
176,362 + GFF5548 0.10 +0.1
176,362 + GFF5548 0.10 -0.4
176,362 + GFF5548 0.10 +0.9
176,362 + GFF5548 0.10 -3.4
176,362 + GFF5548 0.10 -0.6
176,362 + GFF5548 0.10 -0.8
176,362 + GFF5548 0.10 -1.6
176,362 + GFF5548 0.10 -1.2
176,362 + GFF5548 0.10 -1.4
176,362 + GFF5548 0.10 -0.8
176,362 + GFF5548 0.10 +0.6
176,362 + GFF5548 0.10 -1.4
176,363 - GFF5548 0.10 -3.3
176,363 - GFF5548 0.10 +1.5
176,363 - GFF5548 0.10 -1.5
176,363 - GFF5548 0.10 -3.0
176,363 - GFF5548 0.10 -1.1
176,363 - GFF5548 0.10 -3.0
176,363 - GFF5548 0.10 -0.8
176,363 - GFF5548 0.10 -1.8
176,363 - GFF5548 0.10 -0.9
176,363 - GFF5548 0.10 -1.9
176,363 - GFF5548 0.10 +1.0
176,363 - GFF5548 0.10 -0.2
176,363 - GFF5548 0.10 -1.3
176,363 - GFF5548 0.10 -0.2
176,363 - GFF5548 0.10 -0.8
176,363 - GFF5548 0.10 +0.4
176,363 - GFF5548 0.10 -1.8
176,363 - GFF5548 0.10 +1.4
176,363 - GFF5548 0.10 -2.3
176,363 - GFF5548 0.10 +0.6
176,363 - GFF5548 0.10 -2.1
176,363 - GFF5548 0.10 -1.3
176,363 - GFF5548 0.10 +2.0
176,429 - GFF5548 0.14 -1.4
176,725 + GFF5548 0.31 -1.0
176,725 + GFF5548 0.31 +0.3
176,725 + GFF5548 0.31 -1.6
176,776 + GFF5548 0.34 +1.2
176,776 + GFF5548 0.34 -1.3
176,776 + GFF5548 0.34 -1.0
176,776 + GFF5548 0.34 -0.8
176,776 + GFF5548 0.34 -0.5
176,776 + GFF5548 0.34 -1.4
176,776 + GFF5548 0.34 -2.8
176,776 + GFF5548 0.34 +0.1
176,776 + GFF5548 0.34 -1.6
176,776 + GFF5548 0.34 -0.8
176,776 + GFF5548 0.34 -0.7
176,776 + GFF5548 0.34 -1.0
176,776 + GFF5548 0.34 -2.1
176,776 + GFF5548 0.34 +0.2
176,776 + GFF5548 0.34 -3.3
176,776 + GFF5548 0.34 -2.5
176,776 + GFF5548 0.34 -2.8
176,776 + GFF5548 0.34 +0.9
176,777 - GFF5548 0.34 +2.1
176,777 - GFF5548 0.34 -3.0
176,777 - GFF5548 0.34 -1.8
176,777 - GFF5548 0.34 +1.1
176,777 - GFF5548 0.34 -1.0
176,777 - GFF5548 0.34 -2.2
176,777 - GFF5548 0.34 -1.9
176,777 - GFF5548 0.34 +0.9
176,777 - GFF5548 0.34 -3.3
176,777 - GFF5548 0.34 -0.9
176,777 - GFF5548 0.34 +2.7
176,777 - GFF5548 0.34 -2.3
176,777 - GFF5548 0.34 -1.4
176,777 - GFF5548 0.34 -1.1
176,986 + GFF5548 0.46 -1.1
176,987 - GFF5548 0.46 -0.2
176,987 - GFF5548 0.46 -2.8
176,987 - GFF5548 0.46 -0.3
176,988 + GFF5548 0.46 +0.8
176,989 - GFF5548 0.46 -1.3
176,989 - GFF5548 0.46 -0.1
177,159 + GFF5548 0.56 +0.4

Or see this region's nucleotide sequence