Strain Fitness in Variovorax sp. SCN45 around GFF5490

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
121,764	+		GFF5489	0.34	-3.7
122,233	+		GFF5489	0.77	-1.7
122,233	+		GFF5489	0.77	+1.8
122,233	+		GFF5489	0.77	-1.5
122,234	-		GFF5489	0.77	-1.3
122,234	-		GFF5489	0.77	-1.4
122,234	-		GFF5489	0.77	+1.7
122,254	+		GFF5489	0.79	-3.1
122,254	+		GFF5489	0.79	-1.4
122,254	+		GFF5489	0.79	-2.2
122,254	+		GFF5489	0.79	+0.8
122,254	+		GFF5489	0.79	+2.1
122,254	+		GFF5489	0.79	+4.5
122,254	+		GFF5489	0.79	-1.8
122,254	+		GFF5489	0.79	-1.3
122,254	+		GFF5489	0.79	+0.6
122,254	+		GFF5489	0.79	+2.3
122,254	+		GFF5489	0.79	-1.5
122,254	+		GFF5489	0.79	+1.3
122,254	+		GFF5489	0.79	+2.3
122,254	+		GFF5489	0.79	+0.3
122,254	+		GFF5489	0.79	-0.3
122,254	+		GFF5489	0.79	+0.2
122,254	+		GFF5489	0.79	-1.6
122,255	-		GFF5489	0.79	+0.7
122,255	-		GFF5489	0.79	-0.8
122,255	-		GFF5489	0.79	-2.1
122,255	-		GFF5489	0.79	+0.9
122,255	-		GFF5489	0.79	+0.2
122,255	-		GFF5489	0.79	-0.0
122,255	-		GFF5489	0.79	-2.4
122,255	-		GFF5489	0.79	+1.1
122,255	-		GFF5489	0.79	+2.5
122,255	-		GFF5489	0.79	+1.3
122,255	-		GFF5489	0.79	+0.2
122,255	-		GFF5489	0.79	-0.1
122,255	-		GFF5489	0.79	-0.7
122,255	-		GFF5489	0.79	+1.5
122,255	-		GFF5489	0.79	-0.1
122,255	-		GFF5489	0.79	-0.2
122,255	-		GFF5489	0.79	+0.5
122,255	-		GFF5489	0.79	-0.1
122,255	-		GFF5489	0.79	-0.3
122,671	+				+1.3
122,671	+				-2.3
122,671	+				+0.9
122,672	-				-0.3
122,672	-				+0.8
122,672	-				-1.8
122,672	-				+1.1
122,881	+		GFF5490	0.22	-2.2
122,881	+		GFF5490	0.22	-0.4
122,882	-		GFF5490	0.22	-0.6
122,932	+		GFF5490	0.26	+0.2
122,932	+		GFF5490	0.26	+1.4
122,932	+		GFF5490	0.26	-0.8
122,932	+		GFF5490	0.26	+2.2
122,932	+		GFF5490	0.26	+1.5
122,932	+		GFF5490	0.26	-1.6
122,932	+		GFF5490	0.26	-1.3
122,932	+		GFF5490	0.26	+2.5
122,932	+		GFF5490	0.26	+1.4
122,932	+		GFF5490	0.26	+1.1
122,932	+		GFF5490	0.26	-1.2
122,932	+		GFF5490	0.26	-0.5
122,932	+		GFF5490	0.26	+3.3
122,932	+		GFF5490	0.26	+2.2
122,932	+		GFF5490	0.26	-0.3
122,932	+		GFF5490	0.26	+1.0
122,932	+		GFF5490	0.26	-2.2
122,932	+		GFF5490	0.26	+0.9
122,932	+		GFF5490	0.26	+0.2
122,932	+		GFF5490	0.26	-2.5
122,932	+		GFF5490	0.26	-1.1
122,932	+		GFF5490	0.26	-2.1
122,932	+		GFF5490	0.26	+0.9
122,932	+		GFF5490	0.26	-3.0
122,932	+		GFF5490	0.26	-0.1
122,933	-		GFF5490	0.26	-2.9
122,933	-		GFF5490	0.26	-0.6
122,933	-		GFF5490	0.26	+0.6
122,933	-		GFF5490	0.26	+0.8
122,933	-		GFF5490	0.26	-0.8
122,933	-		GFF5490	0.26	-1.9
122,933	-		GFF5490	0.26	-1.6
122,933	-		GFF5490	0.26	-0.9
122,933	-		GFF5490	0.26	-2.9
122,933	-		GFF5490	0.26	-2.4
122,933	-		GFF5490	0.26	-0.9
122,933	-		GFF5490	0.26	+0.2
122,933	-		GFF5490	0.26	-2.6
122,933	-		GFF5490	0.26	-0.9
122,933	-		GFF5490	0.26	-0.6
122,933	-		GFF5490	0.26	+1.1
122,933	-		GFF5490	0.26	-0.5
122,933	-		GFF5490	0.26	-1.1
123,100	+		GFF5490	0.40	+0.8
123,100	+		GFF5490	0.40	+0.2
123,100	+		GFF5490	0.40	-0.2
123,100	+		GFF5490	0.40	-1.9
123,100	+		GFF5490	0.40	+1.4
123,100	+		GFF5490	0.40	+1.4
123,100	+		GFF5490	0.40	+0.2
123,100	+		GFF5490	0.40	-0.7
123,100	+		GFF5490	0.40	-2.5
123,100	+		GFF5490	0.40	-0.5
123,101	-		GFF5490	0.40	-2.4
123,101	-		GFF5490	0.40	-0.1
123,101	-		GFF5490	0.40	-1.6
123,101	-		GFF5490	0.40	+0.5
123,101	-		GFF5490	0.40	-1.6
123,101	-		GFF5490	0.40	-1.4
123,112	+		GFF5490	0.41	-3.9
123,113	-		GFF5490	0.41	-1.4
123,113	-		GFF5490	0.41	+0.0
123,113	-		GFF5490	0.41	-1.3
123,229	+		GFF5490	0.51	-1.1
123,229	+		GFF5490	0.51	-1.2
123,229	+		GFF5490	0.51	-0.6
123,229	+		GFF5490	0.51	+0.8
123,230	-		GFF5490	0.51	+2.9
123,230	-		GFF5490	0.51	-1.0
123,230	-		GFF5490	0.51	-0.7
123,490	+		GFF5490	0.72	+0.7
123,490	+		GFF5490	0.72	+0.0
123,490	+		GFF5490	0.72	-1.3
123,490	+		GFF5490	0.72	-1.5
123,490	+		GFF5490	0.72	+0.0
123,490	+		GFF5490	0.72	+1.3
123,490	+		GFF5490	0.72	+0.4
123,490	+		GFF5490	0.72	-3.8
123,490	+		GFF5490	0.72	-3.0
123,490	+		GFF5490	0.72	-1.6
123,490	+		GFF5490	0.72	-0.2
123,490	+		GFF5490	0.72	-0.3
123,490	+		GFF5490	0.72	+1.1
123,491	-		GFF5490	0.72	-2.6
123,491	-		GFF5490	0.72	-4.3
123,491	-		GFF5490	0.72	+0.6
123,491	-		GFF5490	0.72	+0.8
123,491	-		GFF5490	0.72	+1.2
123,491	-		GFF5490	0.72	-0.5
123,491	-		GFF5490	0.72	-0.3
123,491	-		GFF5490	0.72	-3.2
123,491	-		GFF5490	0.72	-0.7
123,491	-		GFF5490	0.72	+1.9
123,491	-		GFF5490	0.72	-0.1
123,491	-		GFF5490	0.72	-1.1
123,508	+		GFF5490	0.74	+0.2
123,508	+		GFF5490	0.74	+0.9
123,508	+		GFF5490	0.74	-0.5
123,508	+		GFF5490	0.74	+0.5
123,508	+		GFF5490	0.74	-1.4
123,508	+		GFF5490	0.74	-1.7
123,508	+		GFF5490	0.74	+2.5
123,509	-		GFF5490	0.74	-1.3
123,509	-		GFF5490	0.74	-1.2
123,509	-		GFF5490	0.74	+1.0
123,583	+		GFF5490	0.80	-0.6
123,583	+		GFF5490	0.80	-1.6
123,583	+		GFF5490	0.80	+0.6
123,583	+		GFF5490	0.80	-0.5
123,583	+		GFF5490	0.80	-1.9
123,583	+		GFF5490	0.80	-2.3
123,583	+		GFF5490	0.80	+3.6
123,583	+		GFF5490	0.80	+0.3
123,583	+		GFF5490	0.80	-1.8
123,584	-		GFF5490	0.80	+0.9
123,584	-		GFF5490	0.80	-1.3
123,584	-		GFF5490	0.80	-1.2
123,584	-		GFF5490	0.80	+2.3
123,584	-		GFF5490	0.80	+0.5
123,584	-		GFF5490	0.80	+1.5
123,584	-		GFF5490	0.80	+0.5
123,628	+		GFF5490	0.83	-3.6
123,628	+		GFF5490	0.83	+0.3
123,628	+		GFF5490	0.83	+1.5
123,628	+		GFF5490	0.83	+0.9
123,628	+		GFF5490	0.83	-0.8
123,628	+		GFF5490	0.83	+0.5
123,628	+		GFF5490	0.83	+0.1
123,629	-		GFF5490	0.83	-3.4
123,629	-		GFF5490	0.83	-2.1
123,629	-		GFF5490	0.83	-1.7
123,629	-		GFF5490	0.83	+2.6
123,629	-		GFF5490	0.83	-0.5
123,629	-		GFF5490	0.83	-0.2
123,629	-		GFF5490	0.83	-1.5
123,721	+				-1.9
123,721	+				+1.2
123,722	-				-0.7
123,722	-				-2.0
123,722	-				-0.6
123,722	-				+2.5
123,855	+				-0.7
123,855	+				+1.2
123,855	+				-1.2
123,855	+				-0.3
123,855	+				+1.5
123,855	+				+0.7
123,855	+				+0.2
123,855	+				-0.9
123,855	+				+0.5
123,856	-				-0.5
123,856	-				-1.1
123,856	-				-2.9
123,856	-				-0.6
123,867	+				-0.5
123,867	+				+1.9
123,867	+				-0.9
123,867	+				-0.3
123,966	+				-0.5
123,966	+				+0.6
123,966	+				+0.7
123,966	+				-1.8
123,967	-				+3.3
124,107	+		GFF5491	0.23	+0.9
124,428	+		GFF5491	0.84	+0.2
124,428	+		GFF5491	0.84	-2.5
124,428	+		GFF5491	0.84	-2.3
124,428	+		GFF5491	0.84	+1.5
124,428	+		GFF5491	0.84	-2.0
124,428	+		GFF5491	0.84	+0.2
124,428	+		GFF5491	0.84	-1.6
124,428	+		GFF5491	0.84	-0.1
124,429	-		GFF5491	0.85	-0.8
124,429	-		GFF5491	0.85	+1.5
124,429	-		GFF5491	0.85	-1.4
124,429	-		GFF5491	0.85	+0.9
124,429	-		GFF5491	0.85	+0.9
124,429	-		GFF5491	0.85	-0.6
124,429	-		GFF5491	0.85	-0.6
124,429	-		GFF5491	0.85	-0.6
124,429	-		GFF5491	0.85	-2.0
124,429	-		GFF5491	0.85	-0.3
124,608	+		GFF5492	0.19	+0.5
124,608	+		GFF5492	0.19	-0.9
124,608	+		GFF5492	0.19	-0.1
124,608	+		GFF5492	0.19	-0.9
124,609	-		GFF5492	0.19	-2.1
124,609	-		GFF5492	0.19	-1.6
124,609	-		GFF5492	0.19	-1.1
124,609	-		GFF5492	0.19	-1.6
124,609	-		GFF5492	0.19	+0.2
124,609	-		GFF5492	0.19	+1.0
124,700	+		GFF5492	0.37	-1.5
124,700	+		GFF5492	0.37	+0.5
124,700	+		GFF5492	0.37	-2.1
124,701	-		GFF5492	0.37	+2.5
124,701	-		GFF5492	0.37	+2.5