Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5421 and GFF5422 are separated by 19 nucleotides GFF5422 and GFF5423 are separated by 94 nucleotides GFF5423 and GFF5424 are separated by 87 nucleotides GFF5424 and GFF5425 are separated by 87 nucleotides
GFF5421 - Peptidase M48, Ste24p precursor, at 46,991 to 48,556
GFF5421
GFF5422 - putative membrane protein, at 48,576 to 48,929
GFF5422
GFF5423 - FIG00537205: hypothetical protein, at 49,024 to 49,488
GFF5423
GFF5424 - Membrane protein TerC, possibly involved in tellurium resistance, at 49,576 to 50,322
GFF5424
GFF5425 - no description, at 50,410 to 50,529
GFF5425
Position (kb) 49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 48.044 kb on + strand, within GFF5421 at 48.044 kb on + strand, within GFF5421 at 48.044 kb on + strand, within GFF5421 at 48.044 kb on + strand, within GFF5421 at 48.045 kb on - strand, within GFF5421 at 48.045 kb on - strand, within GFF5421 at 48.045 kb on - strand, within GFF5421 at 48.045 kb on - strand, within GFF5421 at 48.332 kb on + strand, within GFF5421 at 48.473 kb on + strand at 48.474 kb on - strand at 48.474 kb on - strand at 48.474 kb on - strand at 48.474 kb on - strand at 48.474 kb on - strand at 48.474 kb on - strand at 48.474 kb on - strand at 48.554 kb on + strand at 48.555 kb on - strand at 48.555 kb on - strand at 48.555 kb on - strand at 48.634 kb on + strand, within GFF5422 at 48.634 kb on + strand, within GFF5422 at 48.634 kb on + strand, within GFF5422 at 48.634 kb on + strand, within GFF5422 at 48.634 kb on + strand, within GFF5422 at 48.635 kb on - strand, within GFF5422 at 48.635 kb on - strand, within GFF5422 at 48.635 kb on - strand, within GFF5422 at 48.635 kb on - strand, within GFF5422 at 48.635 kb on - strand, within GFF5422 at 48.635 kb on - strand, within GFF5422 at 48.868 kb on + strand, within GFF5422 at 48.869 kb on - strand, within GFF5422 at 48.869 kb on - strand, within GFF5422 at 48.869 kb on - strand, within GFF5422 at 48.869 kb on - strand, within GFF5422 at 48.869 kb on - strand, within GFF5422 at 48.869 kb on - strand, within GFF5422 at 48.869 kb on - strand, within GFF5422 at 48.869 kb on - strand, within GFF5422 at 48.869 kb on - strand, within GFF5422 at 48.869 kb on - strand, within GFF5422 at 48.874 kb on + strand, within GFF5422 at 48.874 kb on + strand, within GFF5422 at 48.874 kb on + strand, within GFF5422 at 48.874 kb on + strand, within GFF5422 at 48.874 kb on + strand, within GFF5422 at 48.874 kb on + strand, within GFF5422 at 48.874 kb on + strand, within GFF5422 at 48.874 kb on + strand, within GFF5422 at 48.874 kb on + strand, within GFF5422 at 48.875 kb on - strand, within GFF5422 at 48.875 kb on - strand, within GFF5422 at 48.875 kb on - strand, within GFF5422 at 48.875 kb on - strand, within GFF5422 at 48.875 kb on - strand, within GFF5422 at 49.025 kb on + strand at 49.026 kb on - strand at 49.246 kb on + strand, within GFF5423 at 49.246 kb on + strand, within GFF5423 at 49.246 kb on + strand, within GFF5423 at 49.246 kb on + strand, within GFF5423 at 49.246 kb on + strand, within GFF5423 at 49.247 kb on - strand, within GFF5423 at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.451 kb on + strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.452 kb on - strand at 49.467 kb on + strand at 49.467 kb on + strand at 49.467 kb on + strand at 49.467 kb on + strand at 49.467 kb on + strand at 49.469 kb on + strand at 49.469 kb on + strand at 49.469 kb on + strand at 49.469 kb on + strand at 49.469 kb on + strand at 49.469 kb on + strand at 49.470 kb on - strand at 49.470 kb on - strand at 49.470 kb on - strand at 49.470 kb on - strand at 49.470 kb on - strand at 49.470 kb on - strand at 49.470 kb on - strand at 49.504 kb on + strand at 49.504 kb on + strand at 49.504 kb on + strand at 49.504 kb on + strand at 49.504 kb on + strand at 49.504 kb on + strand at 49.504 kb on + strand at 49.505 kb on - strand at 49.505 kb on - strand at 49.505 kb on - strand at 49.505 kb on - strand at 49.505 kb on - strand at 49.505 kb on - strand at 49.508 kb on + strand at 49.508 kb on + strand at 49.508 kb on + strand at 49.508 kb on + strand at 49.508 kb on + strand at 49.508 kb on + strand at 49.508 kb on + strand at 49.508 kb on + strand at 49.508 kb on + strand at 49.508 kb on + strand at 49.508 kb on + strand at 49.509 kb on - strand at 49.509 kb on - strand at 49.509 kb on - strand at 49.509 kb on - strand at 49.509 kb on - strand at 49.509 kb on - strand at 49.509 kb on - strand at 49.509 kb on - strand at 49.509 kb on - strand at 49.509 kb on - strand at 49.509 kb on - strand at 49.509 kb on - strand at 49.509 kb on - strand at 49.551 kb on - strand at 49.679 kb on + strand, within GFF5424 at 49.679 kb on + strand, within GFF5424 at 49.680 kb on - strand, within GFF5424 at 50.277 kb on + strand at 50.322 kb on + strand at 50.322 kb on + strand at 50.322 kb on + strand at 50.322 kb on + strand at 50.323 kb on - strand at 50.323 kb on - strand at 50.323 kb on - strand at 50.323 kb on - strand at 50.323 kb on - strand at 50.323 kb on - strand at 50.323 kb on - strand at 50.323 kb on - strand at 50.323 kb on - strand at 50.323 kb on - strand at 50.323 kb on - strand at 50.323 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 48,044 + GFF5421 0.67 +0.9 48,044 + GFF5421 0.67 +1.2 48,044 + GFF5421 0.67 -0.2 48,044 + GFF5421 0.67 +0.8 48,045 - GFF5421 0.67 +1.3 48,045 - GFF5421 0.67 -0.5 48,045 - GFF5421 0.67 -0.2 48,045 - GFF5421 0.67 +0.5 48,332 + GFF5421 0.86 +0.2 48,473 + -0.1 48,474 - -2.1 48,474 - +0.9 48,474 - +0.1 48,474 - -1.5 48,474 - -2.0 48,474 - -0.6 48,474 - +3.4 48,554 + +1.3 48,555 - -3.3 48,555 - -1.2 48,555 - -1.2 48,634 + GFF5422 0.16 -1.6 48,634 + GFF5422 0.16 -2.9 48,634 + GFF5422 0.16 -1.2 48,634 + GFF5422 0.16 -1.3 48,634 + GFF5422 0.16 -3.6 48,635 - GFF5422 0.17 -0.8 48,635 - GFF5422 0.17 -0.1 48,635 - GFF5422 0.17 -0.9 48,635 - GFF5422 0.17 -0.4 48,635 - GFF5422 0.17 -2.9 48,635 - GFF5422 0.17 -0.3 48,868 + GFF5422 0.82 +0.9 48,869 - GFF5422 0.83 -0.9 48,869 - GFF5422 0.83 -1.3 48,869 - GFF5422 0.83 +0.5 48,869 - GFF5422 0.83 -0.8 48,869 - GFF5422 0.83 -0.8 48,869 - GFF5422 0.83 -1.2 48,869 - GFF5422 0.83 -3.4 48,869 - GFF5422 0.83 -0.9 48,869 - GFF5422 0.83 -0.1 48,869 - GFF5422 0.83 -0.5 48,874 + GFF5422 0.84 +0.0 48,874 + GFF5422 0.84 -1.2 48,874 + GFF5422 0.84 -0.5 48,874 + GFF5422 0.84 +2.2 48,874 + GFF5422 0.84 +0.7 48,874 + GFF5422 0.84 +0.7 48,874 + GFF5422 0.84 -1.6 48,874 + GFF5422 0.84 -1.8 48,874 + GFF5422 0.84 +0.0 48,875 - GFF5422 0.84 -0.9 48,875 - GFF5422 0.84 +0.7 48,875 - GFF5422 0.84 +0.3 48,875 - GFF5422 0.84 -2.2 48,875 - GFF5422 0.84 +1.1 49,025 + +0.5 49,026 - -0.2 49,246 + GFF5423 0.48 -0.3 49,246 + GFF5423 0.48 +1.1 49,246 + GFF5423 0.48 -1.5 49,246 + GFF5423 0.48 +0.2 49,246 + GFF5423 0.48 -1.8 49,247 - GFF5423 0.48 -3.0 49,451 + -0.7 49,451 + -2.2 49,451 + -0.0 49,451 + -0.5 49,451 + -0.6 49,451 + +0.2 49,451 + -1.7 49,451 + -2.3 49,451 + +0.4 49,451 + -2.1 49,451 + +0.6 49,451 + -1.9 49,451 + +0.3 49,451 + -0.1 49,451 + +0.3 49,451 + -1.3 49,451 + -0.7 49,451 + -0.1 49,452 - -0.4 49,452 - +0.4 49,452 - +1.5 49,452 - -1.6 49,452 - -0.3 49,452 - -0.1 49,452 - -1.9 49,452 - -1.4 49,452 - -3.0 49,452 - +0.8 49,452 - +1.2 49,452 - +1.1 49,452 - -0.1 49,452 - +0.2 49,452 - -0.1 49,452 - -0.1 49,452 - +0.8 49,467 + -2.4 49,467 + -0.8 49,467 + -0.8 49,467 + +0.8 49,467 + -0.4 49,469 + -2.1 49,469 + -2.1 49,469 + +0.1 49,469 + -0.1 49,469 + +0.2 49,469 + -1.2 49,470 - -2.9 49,470 - +1.6 49,470 - -1.7 49,470 - -1.8 49,470 - +0.3 49,470 - -1.3 49,470 - -0.7 49,504 + -0.1 49,504 + +0.0 49,504 + -1.7 49,504 + +0.9 49,504 + +0.5 49,504 + +1.0 49,504 + -0.8 49,505 - -2.1 49,505 - +2.5 49,505 - -2.5 49,505 - +2.5 49,505 - +0.0 49,505 - -0.0 49,508 + -2.4 49,508 + -1.3 49,508 + -0.8 49,508 + -1.4 49,508 + -1.7 49,508 + -2.9 49,508 + +1.1 49,508 + -1.5 49,508 + +0.4 49,508 + -0.7 49,508 + -2.9 49,509 - +0.5 49,509 - -0.1 49,509 - -0.8 49,509 - +0.2 49,509 - +0.4 49,509 - +0.8 49,509 - -0.2 49,509 - +2.7 49,509 - -1.9 49,509 - -0.5 49,509 - +0.8 49,509 - +0.4 49,509 - -0.2 49,551 - -0.1 49,679 + GFF5424 0.14 -0.5 49,679 + GFF5424 0.14 -1.9 49,680 - GFF5424 0.14 +2.5 50,277 + +0.5 50,322 + -0.8 50,322 + +2.8 50,322 + +1.5 50,322 + +0.2 50,323 - +0.9 50,323 - +0.8 50,323 - +1.0 50,323 - -0.5 50,323 - -0.8 50,323 - -0.8 50,323 - -1.5 50,323 - +0.5 50,323 - +0.4 50,323 - -1.9 50,323 - +1.0 50,323 - +1.6
Or see this region's nucleotide sequence