Strain Fitness in Variovorax sp. SCN45 around GFF5245

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
108,182	+		GFF5244	0.21	+0.7
108,182	+		GFF5244	0.21	+0.6
108,182	+		GFF5244	0.21	+0.4
108,182	+		GFF5244	0.21	-1.4
108,182	+		GFF5244	0.21	-1.4
108,182	+		GFF5244	0.21	+3.3
108,182	+		GFF5244	0.21	+1.4
108,183	-		GFF5244	0.21	+0.4
108,183	-		GFF5244	0.21	+1.1
108,183	-		GFF5244	0.21	+1.4
108,183	-		GFF5244	0.21	+0.4
108,183	-		GFF5244	0.21	+1.5
108,183	-		GFF5244	0.21	+1.3
108,183	-		GFF5244	0.21	+0.2
108,188	+		GFF5244	0.22	+0.6
108,189	-		GFF5244	0.22	+0.6
108,189	-		GFF5244	0.22	+1.9
108,227	+		GFF5244	0.30	+1.2
108,228	-		GFF5244	0.30	-0.1
108,326	+		GFF5244	0.50	+1.3
108,490	-		GFF5244	0.84	-2.3
108,513	+		GFF5244	0.88	-0.1
108,514	-		GFF5244	0.88	-0.8
108,519	+		GFF5244	0.89	-2.6
108,519	+		GFF5244	0.89	-0.3
108,519	+		GFF5244	0.89	+0.3
108,519	+		GFF5244	0.89	+0.6
108,519	+		GFF5244	0.89	-3.0
108,519	+		GFF5244	0.89	-0.4
108,519	+		GFF5244	0.89	+1.2
108,520	-		GFF5244	0.90	-2.3
108,520	-		GFF5244	0.90	+0.6
108,520	-		GFF5244	0.90	-1.2
108,520	-		GFF5244	0.90	-2.3
108,520	-		GFF5244	0.90	-1.2
108,520	-		GFF5244	0.90	-0.7
108,581	+				+1.5
108,581	+				-1.1
108,923	+		GFF5245	0.45	+0.5
108,923	+		GFF5245	0.45	+0.2
108,923	+		GFF5245	0.45	-1.0
108,923	+		GFF5245	0.45	+0.2
108,923	+		GFF5245	0.45	+1.0
108,923	+		GFF5245	0.45	+1.4
108,923	+		GFF5245	0.45	+0.4
108,923	+		GFF5245	0.45	+1.5
108,923	+		GFF5245	0.45	-0.3
108,923	+		GFF5245	0.45	-0.4
108,923	+		GFF5245	0.45	+1.7
108,923	+		GFF5245	0.45	-0.7
108,923	+		GFF5245	0.45	-0.0
108,923	+		GFF5245	0.45	+1.5
108,923	+		GFF5245	0.45	-0.4
108,923	+		GFF5245	0.45	+5.2
108,923	+		GFF5245	0.45	+0.3
108,923	+		GFF5245	0.45	-0.1
108,923	+		GFF5245	0.45	+1.5
108,923	+		GFF5245	0.45	+1.7
108,923	+		GFF5245	0.45	+0.9
108,924	-		GFF5245	0.45	-1.4
108,924	-		GFF5245	0.45	+1.0
108,924	-		GFF5245	0.45	-0.4
108,924	-		GFF5245	0.45	+1.5
108,924	-		GFF5245	0.45	+1.0
108,924	-		GFF5245	0.45	-0.6
108,924	-		GFF5245	0.45	+1.1
108,924	-		GFF5245	0.45	+0.3
108,924	-		GFF5245	0.45	-2.3
108,924	-		GFF5245	0.45	+0.5
108,924	-		GFF5245	0.45	+1.1
108,924	-		GFF5245	0.45	-1.8
108,924	-		GFF5245	0.45	+1.8
108,924	-		GFF5245	0.45	-0.9
108,924	-		GFF5245	0.45	-0.3
108,924	-		GFF5245	0.45	+1.2
108,924	-		GFF5245	0.45	+3.9
108,924	-		GFF5245	0.45	+4.1
109,277	-				-3.4
109,303	+				+0.2
109,304	-				+0.2
109,304	-				+0.2
109,309	+				-2.0
109,693	+		GFF5246	0.28	-1.4
109,693	+		GFF5246	0.28	-1.0
109,694	-		GFF5246	0.28	-0.6
109,749	+		GFF5246	0.31	-3.3
109,907	-		GFF5246	0.41	+0.2
109,907	-		GFF5246	0.41	-1.0
109,940	-		GFF5246	0.43	-3.1
109,940	-		GFF5246	0.43	-1.3
110,050	+		GFF5246	0.50	-2.6
110,051	-		GFF5246	0.50	-0.8
110,051	-		GFF5246	0.50	-4.8
110,051	-		GFF5246	0.50	-3.1