Strain Fitness in Variovorax sp. SCN45 around GFF523

Experiment: Community=Kojac gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF522 and GFF523 are separated by 88 nucleotidesGFF523 and GFF524 are separated by 1 nucleotidesGFF524 and GFF525 are separated by 98 nucleotides GFF522 - RND efflux system, inner membrane transporter, at 562,022 to 565,138 GFF522 GFF523 - Tripartite tricarboxylate transporter TctA family, at 565,227 to 566,750 GFF523 GFF524 - Tripartite tricarboxylate transporter TctB family, at 566,752 to 567,288 GFF524 GFF525 - Tripartite tricarboxylate transporter TctC family, at 567,387 to 568,346 GFF525 Position (kb) 565 566 567Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 564.593 kb on + strand, within GFF522at 564.593 kb on + strand, within GFF522at 564.593 kb on + strand, within GFF522at 564.593 kb on + strand, within GFF522at 564.593 kb on + strand, within GFF522at 564.593 kb on + strand, within GFF522at 564.593 kb on + strand, within GFF522at 564.593 kb on + strand, within GFF522at 564.593 kb on + strand, within GFF522at 564.593 kb on + strand, within GFF522at 564.594 kb on - strand, within GFF522at 564.594 kb on - strand, within GFF522at 564.594 kb on - strand, within GFF522at 564.594 kb on - strand, within GFF522at 564.594 kb on - strand, within GFF522at 564.594 kb on - strand, within GFF522at 564.594 kb on - strand, within GFF522at 564.594 kb on - strand, within GFF522at 564.783 kb on - strand, within GFF522at 564.783 kb on - strand, within GFF522at 564.783 kb on - strand, within GFF522at 565.025 kb on + strandat 565.025 kb on + strandat 565.026 kb on - strandat 565.026 kb on - strandat 565.097 kb on - strandat 565.097 kb on - strandat 565.136 kb on + strandat 565.136 kb on + strandat 565.137 kb on - strandat 565.188 kb on + strandat 565.188 kb on + strandat 565.189 kb on - strandat 565.189 kb on - strandat 565.189 kb on - strandat 565.228 kb on + strandat 565.229 kb on - strandat 565.229 kb on - strandat 565.528 kb on + strand, within GFF523at 565.528 kb on + strand, within GFF523at 565.529 kb on - strand, within GFF523at 565.564 kb on + strand, within GFF523at 565.564 kb on + strand, within GFF523at 565.564 kb on + strand, within GFF523at 565.565 kb on - strand, within GFF523at 565.651 kb on + strand, within GFF523at 565.651 kb on + strand, within GFF523at 565.651 kb on + strand, within GFF523at 565.651 kb on + strand, within GFF523at 565.652 kb on - strand, within GFF523at 565.652 kb on - strand, within GFF523at 565.652 kb on - strand, within GFF523at 565.723 kb on + strand, within GFF523at 565.723 kb on + strand, within GFF523at 565.723 kb on + strand, within GFF523at 565.723 kb on + strand, within GFF523at 565.724 kb on - strand, within GFF523at 565.724 kb on - strand, within GFF523at 565.915 kb on + strand, within GFF523at 565.916 kb on - strand, within GFF523at 565.916 kb on - strand, within GFF523at 565.916 kb on - strand, within GFF523at 565.916 kb on - strand, within GFF523at 566.034 kb on + strand, within GFF523at 566.077 kb on + strand, within GFF523at 566.077 kb on + strand, within GFF523at 566.077 kb on + strand, within GFF523at 566.077 kb on + strand, within GFF523at 566.078 kb on - strand, within GFF523at 566.078 kb on - strand, within GFF523at 566.078 kb on - strand, within GFF523at 566.089 kb on + strand, within GFF523at 566.089 kb on + strand, within GFF523at 566.089 kb on + strand, within GFF523at 566.089 kb on + strand, within GFF523at 566.174 kb on - strand, within GFF523at 566.174 kb on - strand, within GFF523at 566.207 kb on + strand, within GFF523at 566.311 kb on + strand, within GFF523at 566.311 kb on + strand, within GFF523at 566.312 kb on - strand, within GFF523at 566.312 kb on - strand, within GFF523at 566.312 kb on - strand, within GFF523at 566.533 kb on + strand, within GFF523at 566.533 kb on + strand, within GFF523at 566.533 kb on + strand, within GFF523at 566.533 kb on + strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.546 kb on - strand, within GFF523at 566.546 kb on - strand, within GFF523at 566.546 kb on - strand, within GFF523at 566.546 kb on - strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 567.020 kb on + strand, within GFF524at 567.020 kb on + strand, within GFF524at 567.020 kb on + strand, within GFF524at 567.020 kb on + strand, within GFF524at 567.021 kb on - strand, within GFF524at 567.590 kb on - strand, within GFF525at 567.712 kb on + strand, within GFF525at 567.712 kb on + strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
remove
564,593 + GFF522 0.82 +0.5
564,593 + GFF522 0.82 -1.2
564,593 + GFF522 0.82 -1.1
564,593 + GFF522 0.82 -0.1
564,593 + GFF522 0.82 -3.1
564,593 + GFF522 0.82 +0.1
564,593 + GFF522 0.82 -0.6
564,593 + GFF522 0.82 -0.6
564,593 + GFF522 0.82 -0.1
564,593 + GFF522 0.82 -2.0
564,594 - GFF522 0.83 +1.2
564,594 - GFF522 0.83 -0.8
564,594 - GFF522 0.83 +0.7
564,594 - GFF522 0.83 +1.7
564,594 - GFF522 0.83 -0.5
564,594 - GFF522 0.83 +0.1
564,594 - GFF522 0.83 +0.7
564,594 - GFF522 0.83 +0.1
564,783 - GFF522 0.89 -0.9
564,783 - GFF522 0.89 +2.1
564,783 - GFF522 0.89 -0.0
565,025 + -2.3
565,025 + +0.1
565,026 - -1.3
565,026 - -0.1
565,097 - -1.5
565,097 - +0.1
565,136 + -1.6
565,136 + -2.8
565,137 - -0.0
565,188 + -0.4
565,188 + -0.7
565,189 - -0.6
565,189 - -1.8
565,189 - +0.7
565,228 + +1.7
565,229 - +0.7
565,229 - -1.7
565,528 + GFF523 0.20 -2.5
565,528 + GFF523 0.20 -1.6
565,529 - GFF523 0.20 +1.7
565,564 + GFF523 0.22 -0.2
565,564 + GFF523 0.22 -0.6
565,564 + GFF523 0.22 +0.2
565,565 - GFF523 0.22 -1.9
565,651 + GFF523 0.28 -1.8
565,651 + GFF523 0.28 -0.9
565,651 + GFF523 0.28 -0.7
565,651 + GFF523 0.28 -3.2
565,652 - GFF523 0.28 +0.2
565,652 - GFF523 0.28 -0.7
565,652 - GFF523 0.28 +0.1
565,723 + GFF523 0.33 -2.2
565,723 + GFF523 0.33 -2.7
565,723 + GFF523 0.33 -0.9
565,723 + GFF523 0.33 -0.7
565,724 - GFF523 0.33 -0.5
565,724 - GFF523 0.33 -1.2
565,915 + GFF523 0.45 -1.2
565,916 - GFF523 0.45 +0.1
565,916 - GFF523 0.45 -2.5
565,916 - GFF523 0.45 -0.3
565,916 - GFF523 0.45 -1.8
566,034 + GFF523 0.53 -1.1
566,077 + GFF523 0.56 -2.5
566,077 + GFF523 0.56 +1.0
566,077 + GFF523 0.56 -1.4
566,077 + GFF523 0.56 +1.5
566,078 - GFF523 0.56 -0.4
566,078 - GFF523 0.56 +0.8
566,078 - GFF523 0.56 +1.4
566,089 + GFF523 0.57 -2.2
566,089 + GFF523 0.57 -2.5
566,089 + GFF523 0.57 -0.2
566,089 + GFF523 0.57 +0.6
566,174 - GFF523 0.62 -0.6
566,174 - GFF523 0.62 -0.8
566,207 + GFF523 0.64 +1.3
566,311 + GFF523 0.71 -1.5
566,311 + GFF523 0.71 +0.1
566,312 - GFF523 0.71 +0.1
566,312 - GFF523 0.71 -2.0
566,312 - GFF523 0.71 -2.4
566,533 + GFF523 0.86 -1.5
566,533 + GFF523 0.86 +2.2
566,533 + GFF523 0.86 +2.4
566,533 + GFF523 0.86 +1.4
566,534 - GFF523 0.86 -0.3
566,534 - GFF523 0.86 +0.1
566,534 - GFF523 0.86 +1.0
566,534 - GFF523 0.86 -2.1
566,534 - GFF523 0.86 -1.6
566,534 - GFF523 0.86 -0.6
566,534 - GFF523 0.86 +0.1
566,534 - GFF523 0.86 -0.1
566,545 + GFF523 0.86 -0.6
566,545 + GFF523 0.86 +0.6
566,545 + GFF523 0.86 -0.9
566,545 + GFF523 0.86 -0.4
566,545 + GFF523 0.86 +0.1
566,545 + GFF523 0.86 -2.0
566,546 - GFF523 0.87 -1.3
566,546 - GFF523 0.87 -3.1
566,546 - GFF523 0.87 -2.9
566,546 - GFF523 0.87 -0.3
566,548 + GFF523 0.87 -1.8
566,548 + GFF523 0.87 -1.9
566,548 + GFF523 0.87 +1.1
566,548 + GFF523 0.87 -1.1
566,548 + GFF523 0.87 -1.5
566,548 + GFF523 0.87 -2.7
566,548 + GFF523 0.87 +2.7
566,548 + GFF523 0.87 +0.6
566,549 - GFF523 0.87 -0.2
566,549 - GFF523 0.87 -1.8
566,549 - GFF523 0.87 +1.0
566,549 - GFF523 0.87 -0.8
566,549 - GFF523 0.87 +1.2
566,927 + GFF524 0.33 -1.1
566,927 + GFF524 0.33 +0.1
566,927 + GFF524 0.33 +1.4
566,927 + GFF524 0.33 -0.4
566,927 + GFF524 0.33 -0.9
566,927 + GFF524 0.33 -1.1
566,927 + GFF524 0.33 +0.7
566,928 - GFF524 0.33 +0.7
566,928 - GFF524 0.33 -0.5
566,928 - GFF524 0.33 +1.7
566,928 - GFF524 0.33 -3.5
566,928 - GFF524 0.33 -1.8
566,928 - GFF524 0.33 -1.5
567,020 + GFF524 0.50 -1.0
567,020 + GFF524 0.50 -1.1
567,020 + GFF524 0.50 -1.0
567,020 + GFF524 0.50 +0.1
567,021 - GFF524 0.50 -0.5
567,590 - GFF525 0.21 -0.3
567,712 + GFF525 0.34 +1.1
567,712 + GFF525 0.34 +0.7
567,713 - GFF525 0.34 -0.0
567,713 - GFF525 0.34 -0.6
567,713 - GFF525 0.34 -2.7
567,713 - GFF525 0.34 -1.3
567,713 - GFF525 0.34 -1.1
567,713 - GFF525 0.34 -0.4
567,713 - GFF525 0.34 -2.8

Or see this region's nucleotide sequence