Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF521 and GFF522 are separated by 20 nucleotides GFF522 and GFF523 are separated by 88 nucleotides
GFF521 - Secretion protein HlyD precursor, at 560,865 to 562,001
GFF521
GFF522 - RND efflux system, inner membrane transporter, at 562,022 to 565,138
GFF522
GFF523 - Tripartite tricarboxylate transporter TctA family, at 565,227 to 566,750
GFF523
Position (kb) 562
563
564
565
566 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 561.163 kb on + strand, within GFF521 at 561.163 kb on + strand, within GFF521 at 561.164 kb on - strand, within GFF521 at 561.164 kb on - strand, within GFF521 at 561.164 kb on - strand, within GFF521 at 561.324 kb on + strand, within GFF521 at 561.325 kb on - strand, within GFF521 at 561.325 kb on - strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.999 kb on + strand at 561.999 kb on + strand at 562.000 kb on - strand at 562.000 kb on - strand at 562.044 kb on + strand at 562.044 kb on + strand at 562.487 kb on + strand, within GFF522 at 562.487 kb on + strand, within GFF522 at 562.487 kb on + strand, within GFF522 at 562.487 kb on + strand, within GFF522 at 562.487 kb on + strand, within GFF522 at 562.488 kb on - strand, within GFF522 at 562.488 kb on - strand, within GFF522 at 562.488 kb on - strand, within GFF522 at 562.488 kb on - strand, within GFF522 at 562.803 kb on + strand, within GFF522 at 563.006 kb on + strand, within GFF522 at 563.006 kb on + strand, within GFF522 at 563.006 kb on + strand, within GFF522 at 563.006 kb on + strand, within GFF522 at 563.006 kb on + strand, within GFF522 at 563.006 kb on + strand, within GFF522 at 563.006 kb on + strand, within GFF522 at 563.006 kb on + strand, within GFF522 at 563.006 kb on + strand, within GFF522 at 563.006 kb on + strand, within GFF522 at 563.006 kb on - strand, within GFF522 at 563.007 kb on - strand, within GFF522 at 563.007 kb on - strand, within GFF522 at 563.007 kb on - strand, within GFF522 at 563.007 kb on - strand, within GFF522 at 563.007 kb on - strand, within GFF522 at 563.007 kb on - strand, within GFF522 at 563.007 kb on - strand, within GFF522 at 563.030 kb on + strand, within GFF522 at 563.030 kb on + strand, within GFF522 at 563.031 kb on - strand, within GFF522 at 563.031 kb on - strand, within GFF522 at 563.031 kb on - strand, within GFF522 at 563.031 kb on - strand, within GFF522 at 563.031 kb on - strand, within GFF522 at 563.208 kb on + strand, within GFF522 at 563.209 kb on - strand, within GFF522 at 563.209 kb on - strand, within GFF522 at 563.477 kb on + strand, within GFF522 at 563.477 kb on + strand, within GFF522 at 563.477 kb on + strand, within GFF522 at 563.477 kb on + strand, within GFF522 at 563.477 kb on + strand, within GFF522 at 563.477 kb on + strand, within GFF522 at 563.477 kb on + strand, within GFF522 at 563.478 kb on - strand, within GFF522 at 563.478 kb on - strand, within GFF522 at 563.478 kb on - strand, within GFF522 at 563.531 kb on + strand, within GFF522 at 563.531 kb on + strand, within GFF522 at 563.531 kb on + strand, within GFF522 at 563.531 kb on + strand, within GFF522 at 563.531 kb on + strand, within GFF522 at 563.531 kb on + strand, within GFF522 at 563.531 kb on + strand, within GFF522 at 563.531 kb on + strand, within GFF522 at 563.532 kb on - strand, within GFF522 at 563.532 kb on - strand, within GFF522 at 563.532 kb on - strand, within GFF522 at 563.532 kb on - strand, within GFF522 at 563.675 kb on + strand, within GFF522 at 563.675 kb on + strand, within GFF522 at 563.675 kb on + strand, within GFF522 at 563.675 kb on + strand, within GFF522 at 563.675 kb on + strand, within GFF522 at 563.675 kb on + strand, within GFF522 at 563.675 kb on + strand, within GFF522 at 563.675 kb on + strand, within GFF522 at 563.675 kb on + strand, within GFF522 at 563.676 kb on - strand, within GFF522 at 563.676 kb on - strand, within GFF522 at 563.676 kb on - strand, within GFF522 at 563.676 kb on - strand, within GFF522 at 563.676 kb on - strand, within GFF522 at 563.676 kb on - strand, within GFF522 at 563.676 kb on - strand, within GFF522 at 563.754 kb on + strand, within GFF522 at 563.754 kb on + strand, within GFF522 at 563.774 kb on + strand, within GFF522 at 563.774 kb on + strand, within GFF522 at 563.774 kb on + strand, within GFF522 at 563.774 kb on + strand, within GFF522 at 563.775 kb on - strand, within GFF522 at 563.775 kb on - strand, within GFF522 at 563.775 kb on - strand, within GFF522 at 563.981 kb on + strand, within GFF522 at 563.981 kb on + strand, within GFF522 at 563.981 kb on + strand, within GFF522 at 563.981 kb on + strand, within GFF522 at 563.981 kb on + strand, within GFF522 at 563.981 kb on + strand, within GFF522 at 563.982 kb on - strand, within GFF522 at 563.982 kb on - strand, within GFF522 at 563.982 kb on - strand, within GFF522 at 563.982 kb on - strand, within GFF522 at 563.982 kb on - strand, within GFF522 at 563.982 kb on - strand, within GFF522 at 563.982 kb on - strand, within GFF522 at 563.982 kb on - strand, within GFF522 at 563.982 kb on - strand, within GFF522 at 563.982 kb on - strand, within GFF522 at 564.203 kb on + strand, within GFF522 at 564.204 kb on - strand, within GFF522 at 564.593 kb on + strand, within GFF522 at 564.593 kb on + strand, within GFF522 at 564.593 kb on + strand, within GFF522 at 564.593 kb on + strand, within GFF522 at 564.593 kb on + strand, within GFF522 at 564.593 kb on + strand, within GFF522 at 564.593 kb on + strand, within GFF522 at 564.593 kb on + strand, within GFF522 at 564.593 kb on + strand, within GFF522 at 564.593 kb on + strand, within GFF522 at 564.594 kb on - strand, within GFF522 at 564.594 kb on - strand, within GFF522 at 564.594 kb on - strand, within GFF522 at 564.594 kb on - strand, within GFF522 at 564.594 kb on - strand, within GFF522 at 564.594 kb on - strand, within GFF522 at 564.594 kb on - strand, within GFF522 at 564.594 kb on - strand, within GFF522 at 564.783 kb on - strand, within GFF522 at 564.783 kb on - strand, within GFF522 at 564.783 kb on - strand, within GFF522 at 565.025 kb on + strand at 565.025 kb on + strand at 565.026 kb on - strand at 565.026 kb on - strand at 565.097 kb on - strand at 565.097 kb on - strand at 565.136 kb on + strand at 565.136 kb on + strand at 565.137 kb on - strand at 565.188 kb on + strand at 565.188 kb on + strand at 565.189 kb on - strand at 565.189 kb on - strand at 565.189 kb on - strand at 565.228 kb on + strand at 565.229 kb on - strand at 565.229 kb on - strand at 565.528 kb on + strand, within GFF523 at 565.528 kb on + strand, within GFF523 at 565.529 kb on - strand, within GFF523 at 565.564 kb on + strand, within GFF523 at 565.564 kb on + strand, within GFF523 at 565.564 kb on + strand, within GFF523 at 565.565 kb on - strand, within GFF523 at 565.651 kb on + strand, within GFF523 at 565.651 kb on + strand, within GFF523 at 565.651 kb on + strand, within GFF523 at 565.651 kb on + strand, within GFF523 at 565.652 kb on - strand, within GFF523 at 565.652 kb on - strand, within GFF523 at 565.652 kb on - strand, within GFF523 at 565.723 kb on + strand, within GFF523 at 565.723 kb on + strand, within GFF523 at 565.723 kb on + strand, within GFF523 at 565.723 kb on + strand, within GFF523 at 565.724 kb on - strand, within GFF523 at 565.724 kb on - strand, within GFF523 at 565.915 kb on + strand, within GFF523 at 565.916 kb on - strand, within GFF523 at 565.916 kb on - strand, within GFF523 at 565.916 kb on - strand, within GFF523 at 565.916 kb on - strand, within GFF523 at 566.034 kb on + strand, within GFF523 at 566.077 kb on + strand, within GFF523 at 566.077 kb on + strand, within GFF523 at 566.077 kb on + strand, within GFF523 at 566.077 kb on + strand, within GFF523 at 566.078 kb on - strand, within GFF523 at 566.078 kb on - strand, within GFF523 at 566.078 kb on - strand, within GFF523 at 566.089 kb on + strand, within GFF523 at 566.089 kb on + strand, within GFF523 at 566.089 kb on + strand, within GFF523 at 566.089 kb on + strand, within GFF523
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 561,163 + GFF521 0.26 -1.9 561,163 + GFF521 0.26 +0.5 561,164 - GFF521 0.26 +1.5 561,164 - GFF521 0.26 -0.6 561,164 - GFF521 0.26 -1.1 561,324 + GFF521 0.40 -0.9 561,325 - GFF521 0.40 -2.3 561,325 - GFF521 0.40 -1.5 561,669 + GFF521 0.71 -2.9 561,669 + GFF521 0.71 +2.5 561,669 + GFF521 0.71 -1.5 561,669 + GFF521 0.71 -2.0 561,669 + GFF521 0.71 -0.6 561,669 + GFF521 0.71 +2.3 561,670 - GFF521 0.71 -1.1 561,670 - GFF521 0.71 -0.9 561,670 - GFF521 0.71 -0.3 561,670 - GFF521 0.71 -2.8 561,670 - GFF521 0.71 -1.5 561,670 - GFF521 0.71 -1.7 561,670 - GFF521 0.71 +0.9 561,999 + +1.1 561,999 + -3.2 562,000 - +0.0 562,000 - -1.1 562,044 + -1.7 562,044 + -0.9 562,487 + GFF522 0.15 -3.4 562,487 + GFF522 0.15 +1.7 562,487 + GFF522 0.15 -0.3 562,487 + GFF522 0.15 -1.6 562,487 + GFF522 0.15 -0.9 562,488 - GFF522 0.15 -0.9 562,488 - GFF522 0.15 -0.6 562,488 - GFF522 0.15 -3.0 562,488 - GFF522 0.15 -1.9 562,803 + GFF522 0.25 -0.5 563,006 + GFF522 0.32 +1.1 563,006 + GFF522 0.32 -0.6 563,006 + GFF522 0.32 -1.2 563,006 + GFF522 0.32 -0.9 563,006 + GFF522 0.32 -0.3 563,006 + GFF522 0.32 -1.3 563,006 + GFF522 0.32 +1.6 563,006 + GFF522 0.32 -0.7 563,006 + GFF522 0.32 +0.8 563,006 + GFF522 0.32 +0.4 563,006 - GFF522 0.32 -0.8 563,007 - GFF522 0.32 +0.4 563,007 - GFF522 0.32 +0.5 563,007 - GFF522 0.32 -0.3 563,007 - GFF522 0.32 +0.7 563,007 - GFF522 0.32 +0.5 563,007 - GFF522 0.32 +0.1 563,007 - GFF522 0.32 -2.2 563,030 + GFF522 0.32 -1.8 563,030 + GFF522 0.32 -0.6 563,031 - GFF522 0.32 -0.0 563,031 - GFF522 0.32 -1.2 563,031 - GFF522 0.32 +0.7 563,031 - GFF522 0.32 +0.1 563,031 - GFF522 0.32 +0.4 563,208 + GFF522 0.38 -2.3 563,209 - GFF522 0.38 -1.1 563,209 - GFF522 0.38 +0.1 563,477 + GFF522 0.47 +0.1 563,477 + GFF522 0.47 -1.4 563,477 + GFF522 0.47 -1.1 563,477 + GFF522 0.47 -1.0 563,477 + GFF522 0.47 +0.7 563,477 + GFF522 0.47 -0.9 563,477 + GFF522 0.47 -1.3 563,478 - GFF522 0.47 -3.5 563,478 - GFF522 0.47 -1.3 563,478 - GFF522 0.47 -1.0 563,531 + GFF522 0.48 +0.5 563,531 + GFF522 0.48 -0.3 563,531 + GFF522 0.48 -1.9 563,531 + GFF522 0.48 +1.9 563,531 + GFF522 0.48 -1.5 563,531 + GFF522 0.48 +0.3 563,531 + GFF522 0.48 +0.6 563,531 + GFF522 0.48 -1.5 563,532 - GFF522 0.48 +1.3 563,532 - GFF522 0.48 -0.3 563,532 - GFF522 0.48 -0.0 563,532 - GFF522 0.48 -2.0 563,675 + GFF522 0.53 +0.6 563,675 + GFF522 0.53 +1.4 563,675 + GFF522 0.53 +0.3 563,675 + GFF522 0.53 -2.5 563,675 + GFF522 0.53 -0.4 563,675 + GFF522 0.53 -0.1 563,675 + GFF522 0.53 +0.1 563,675 + GFF522 0.53 -2.0 563,675 + GFF522 0.53 -0.7 563,676 - GFF522 0.53 -2.8 563,676 - GFF522 0.53 +0.2 563,676 - GFF522 0.53 -1.8 563,676 - GFF522 0.53 -0.6 563,676 - GFF522 0.53 -1.9 563,676 - GFF522 0.53 -2.6 563,676 - GFF522 0.53 -1.5 563,754 + GFF522 0.56 +0.5 563,754 + GFF522 0.56 +2.7 563,774 + GFF522 0.56 -3.3 563,774 + GFF522 0.56 -0.6 563,774 + GFF522 0.56 -1.8 563,774 + GFF522 0.56 -1.7 563,775 - GFF522 0.56 +0.1 563,775 - GFF522 0.56 -2.2 563,775 - GFF522 0.56 -2.7 563,981 + GFF522 0.63 +1.2 563,981 + GFF522 0.63 +1.5 563,981 + GFF522 0.63 +0.5 563,981 + GFF522 0.63 +0.1 563,981 + GFF522 0.63 -0.9 563,981 + GFF522 0.63 +2.7 563,982 - GFF522 0.63 +0.5 563,982 - GFF522 0.63 -1.3 563,982 - GFF522 0.63 -2.5 563,982 - GFF522 0.63 -1.2 563,982 - GFF522 0.63 +1.1 563,982 - GFF522 0.63 -1.5 563,982 - GFF522 0.63 -1.3 563,982 - GFF522 0.63 +0.6 563,982 - GFF522 0.63 +1.4 563,982 - GFF522 0.63 +0.3 564,203 + GFF522 0.70 -0.7 564,204 - GFF522 0.70 -0.4 564,593 + GFF522 0.82 +0.5 564,593 + GFF522 0.82 -1.2 564,593 + GFF522 0.82 -1.1 564,593 + GFF522 0.82 -0.1 564,593 + GFF522 0.82 -3.1 564,593 + GFF522 0.82 +0.1 564,593 + GFF522 0.82 -0.6 564,593 + GFF522 0.82 -0.6 564,593 + GFF522 0.82 -0.1 564,593 + GFF522 0.82 -2.0 564,594 - GFF522 0.83 +1.2 564,594 - GFF522 0.83 -0.8 564,594 - GFF522 0.83 +0.7 564,594 - GFF522 0.83 +1.7 564,594 - GFF522 0.83 -0.5 564,594 - GFF522 0.83 +0.1 564,594 - GFF522 0.83 +0.7 564,594 - GFF522 0.83 +0.1 564,783 - GFF522 0.89 -0.9 564,783 - GFF522 0.89 +2.1 564,783 - GFF522 0.89 -0.0 565,025 + -2.3 565,025 + +0.1 565,026 - -1.3 565,026 - -0.1 565,097 - -1.5 565,097 - +0.1 565,136 + -1.6 565,136 + -2.8 565,137 - -0.0 565,188 + -0.4 565,188 + -0.7 565,189 - -0.6 565,189 - -1.8 565,189 - +0.7 565,228 + +1.7 565,229 - +0.7 565,229 - -1.7 565,528 + GFF523 0.20 -2.5 565,528 + GFF523 0.20 -1.6 565,529 - GFF523 0.20 +1.7 565,564 + GFF523 0.22 -0.2 565,564 + GFF523 0.22 -0.6 565,564 + GFF523 0.22 +0.2 565,565 - GFF523 0.22 -1.9 565,651 + GFF523 0.28 -1.8 565,651 + GFF523 0.28 -0.9 565,651 + GFF523 0.28 -0.7 565,651 + GFF523 0.28 -3.2 565,652 - GFF523 0.28 +0.2 565,652 - GFF523 0.28 -0.7 565,652 - GFF523 0.28 +0.1 565,723 + GFF523 0.33 -2.2 565,723 + GFF523 0.33 -2.7 565,723 + GFF523 0.33 -0.9 565,723 + GFF523 0.33 -0.7 565,724 - GFF523 0.33 -0.5 565,724 - GFF523 0.33 -1.2 565,915 + GFF523 0.45 -1.2 565,916 - GFF523 0.45 +0.1 565,916 - GFF523 0.45 -2.5 565,916 - GFF523 0.45 -0.3 565,916 - GFF523 0.45 -1.8 566,034 + GFF523 0.53 -1.1 566,077 + GFF523 0.56 -2.5 566,077 + GFF523 0.56 +1.0 566,077 + GFF523 0.56 -1.4 566,077 + GFF523 0.56 +1.5 566,078 - GFF523 0.56 -0.4 566,078 - GFF523 0.56 +0.8 566,078 - GFF523 0.56 +1.4 566,089 + GFF523 0.57 -2.2 566,089 + GFF523 0.57 -2.5 566,089 + GFF523 0.57 -0.2 566,089 + GFF523 0.57 +0.6
Or see this region's nucleotide sequence