Strain Fitness in Variovorax sp. SCN45 around GFF5045

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
146,029	+				+0.6
146,029	+				-1.1
146,030	-				+0.2
146,030	-				-0.3
146,030	-				+2.2
146,030	-				-1.4
146,847	+		GFF5044	0.88	-0.8
146,847	+		GFF5044	0.88	+1.8
146,847	+		GFF5044	0.88	+0.3
146,847	+		GFF5044	0.88	+1.4
146,848	-		GFF5044	0.88	-0.1
146,848	-		GFF5044	0.88	+1.7
146,953	+				-0.3
146,953	+				-0.3
146,953	+				-0.2
146,953	+				-1.5
146,953	+				-0.9
146,953	+				-2.3
146,954	-				+0.2
146,954	-				+1.9
146,957	+				-2.2
146,957	+				+0.9
146,957	+				+0.6
146,957	+				+1.5
146,957	+				+2.8
146,958	-				-1.4
146,958	-				-0.9
146,958	-				-1.3
146,958	-				-2.0
146,958	-				-3.1
146,958	-				+1.5
146,958	-				-0.3
146,958	-				+0.8
146,958	-				-0.5
146,969	-				-1.8
147,076	+		GFF5045	0.12	-1.7
147,262	+		GFF5045	0.31	-0.2
147,262	+		GFF5045	0.31	+0.7
147,262	+		GFF5045	0.31	+2.3
147,262	+		GFF5045	0.31	-1.3
147,263	-		GFF5045	0.31	-2.4
147,263	-		GFF5045	0.31	-2.2
147,263	-		GFF5045	0.31	+1.6
147,263	-		GFF5045	0.31	-1.1
147,737	-		GFF5045	0.80	-1.1
148,022	+		GFF5046	0.11	-1.9
148,022	+		GFF5046	0.11	-1.9
148,022	+		GFF5046	0.11	+0.1
148,022	+		GFF5046	0.11	+0.2
148,022	+		GFF5046	0.11	+1.2
148,022	+		GFF5046	0.11	+0.2
148,023	-		GFF5046	0.11	+0.5
148,087	+		GFF5046	0.20	-1.6
148,088	-		GFF5046	0.20	-1.5
148,423	+		GFF5046	0.67	-0.2
148,423	+		GFF5046	0.67	-3.0
148,424	-		GFF5046	0.67	-0.6
148,424	-		GFF5046	0.67	+2.2
148,424	-		GFF5046	0.67	-0.2
148,654	+				-0.3
148,654	+				-0.8
148,655	-				+0.4
148,655	-				-0.0
148,679	+				-1.2
148,679	+				-1.3
148,679	+				+2.1
148,679	+				-1.2
148,679	+				-0.2
148,679	+				+1.7
148,679	+				-2.1
148,679	+				-0.9
148,679	+				+0.6
148,679	+				-0.3
148,679	+				+1.0
148,679	+				-0.5
148,679	+				+0.4
148,679	+				-2.7
148,680	-				-0.1
148,680	-				-1.9
148,680	-				-1.9
148,680	-				-0.6
148,680	-				-2.1
148,680	-				+0.5
148,680	-				-2.4
148,680	-				-0.2
148,680	-				-0.2
148,680	-				+0.3
148,680	-				+0.4
148,680	-				-2.0
148,680	-				+0.3
148,680	-				+1.2
148,680	-				-1.7
148,680	-				-0.2
148,863	+		GFF5047	0.80	+0.3
148,863	+		GFF5047	0.80	-2.4
148,863	+		GFF5047	0.80	+0.0
148,863	+		GFF5047	0.80	+0.1
148,863	+		GFF5047	0.80	+1.0
148,863	+		GFF5047	0.80	+0.4
148,863	+		GFF5047	0.80	-2.0
148,864	-		GFF5047	0.81	+0.7
148,864	-		GFF5047	0.81	+0.7
148,864	-		GFF5047	0.81	-2.7
148,864	-		GFF5047	0.81	-0.8