Strain Fitness in Variovorax sp. SCN45 around GFF5018

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
119,875	+		GFF5016	0.82	+1.4
119,876	-		GFF5016	0.83	-2.5
120,038	+				-0.7
120,038	+				-0.4
120,038	+				-1.6
120,038	+				-3.8
120,039	-				-2.0
120,191	+		GFF5017	0.11	-0.6
120,191	+		GFF5017	0.11	+1.8
120,191	+		GFF5017	0.11	+1.0
120,191	+		GFF5017	0.11	-1.9
120,191	+		GFF5017	0.11	-0.5
120,191	+		GFF5017	0.11	-3.5
120,191	+		GFF5017	0.11	-3.1
120,191	+		GFF5017	0.11	-0.6
120,191	+		GFF5017	0.11	-3.1
120,191	+		GFF5017	0.11	-1.6
120,191	+		GFF5017	0.11	+0.2
120,191	+		GFF5017	0.11	-0.8
120,192	-		GFF5017	0.11	+0.8
120,192	-		GFF5017	0.11	-0.4
120,192	-		GFF5017	0.11	-0.4
120,192	-		GFF5017	0.11	+1.7
120,192	-		GFF5017	0.11	-3.0
120,192	-		GFF5017	0.11	+0.7
120,192	-		GFF5017	0.11	-3.4
120,192	-		GFF5017	0.11	+0.3
120,192	-		GFF5017	0.11	+0.0
120,192	-		GFF5017	0.11	-0.5
120,192	-		GFF5017	0.11	-1.5
120,303	+		GFF5017	0.41	-2.0
120,303	+		GFF5017	0.41	-0.4
120,303	+		GFF5017	0.41	+0.6
120,303	+		GFF5017	0.41	-1.7
120,304	-		GFF5017	0.41	-1.9
120,304	-		GFF5017	0.41	+0.1
120,304	-		GFF5017	0.41	+1.1
120,304	-		GFF5017	0.41	-1.5
120,304	-		GFF5017	0.41	+0.9
120,524	+				-2.5
120,524	+				-1.7
120,525	-				-0.4
120,637	+		GFF5018	0.38	-0.2
120,637	+		GFF5018	0.38	-2.2
120,637	+		GFF5018	0.38	+2.0
120,637	+		GFF5018	0.38	-0.3
120,637	+		GFF5018	0.38	+1.7
120,637	+		GFF5018	0.38	+2.0
120,638	-		GFF5018	0.38	+1.0
120,638	-		GFF5018	0.38	+2.4
120,638	-		GFF5018	0.38	+1.2
120,710	+		GFF5018	0.69	-0.6
120,710	+		GFF5018	0.69	-2.2
120,710	+		GFF5018	0.69	-0.1
120,711	-		GFF5018	0.69	+2.5
120,711	-		GFF5018	0.69	+1.1
120,711	-		GFF5018	0.69	-3.1
120,711	-		GFF5018	0.69	+0.8
120,711	-		GFF5018	0.69	-0.1
120,711	-		GFF5018	0.69	+0.6
120,711	-		GFF5018	0.69	-1.2
120,781	+				+1.4
120,781	+				+2.4
120,781	+				-0.1
120,782	-				+0.1
120,782	-				+2.4
120,821	+				+0.1
120,831	+				+0.4
120,831	+				-0.2
120,831	+				-0.2
120,831	+				+0.9
120,831	+				+1.4
120,831	+				+0.7
120,831	+				-2.1
120,831	+				+1.4
120,831	+				-0.6
120,831	+				-1.7
120,831	+				+0.0
120,831	+				+1.6
120,831	+				+1.4
120,831	+				-1.3
120,831	+				-3.3
120,832	-				-1.4
120,832	-				+1.5
120,832	-				-0.2
120,832	-				+3.0
120,832	-				-0.7
120,832	-				+1.1
120,832	-				-0.4
120,832	-				-1.9
120,832	-				+0.8
120,863	+				-1.0
120,863	+				+1.6
120,863	+				+0.5
120,863	+				+0.4
120,863	+				-2.3
120,864	-				+0.3
120,864	-				+0.2
120,864	-				-1.5
120,868	+				+1.1
120,868	+				-4.4
120,868	+				-2.0
120,868	+				-1.4
120,868	+				+1.8
120,868	+				+1.3
120,869	-				+2.1
120,869	-				-2.3
120,869	-				-0.1
120,869	-				+0.8
120,869	-				+0.8
120,869	-				-2.2
120,951	+				-0.9
120,951	+				+2.7
120,951	+				-2.4
120,951	+				-1.6
120,951	+				-3.0
120,951	+				-0.9
120,951	+				-0.5
120,951	+				-0.5
120,951	+				-0.6
120,951	+				+0.8
120,951	+				-0.9
120,952	-				+0.8
120,952	-				+0.4
120,952	-				-2.2
120,952	-				-2.5
120,979	+				-2.1
120,979	+				+0.8
120,979	+				-1.5
120,979	+				+0.1
120,979	+				+1.4
120,979	+				+0.8
120,979	+				+0.6
120,979	+				-1.3
120,979	+				+1.2
120,979	+				-0.2
120,979	+				-1.5
120,980	-				-0.1
120,980	-				-0.9
120,980	-				+0.5
120,980	-				-0.3
120,980	-				+1.0
120,980	-				+0.0
120,980	-				-2.1
120,980	-				+0.3
120,980	-				+0.5
120,980	-				-1.6
120,980	-				-0.2
120,980	-				-0.2
120,983	+				-3.5
120,983	+				+2.1
120,983	+				-0.6
120,983	+				+0.1
120,983	+				-0.4
120,983	+				-0.7
120,983	+				-1.7
120,983	+				-1.6
120,983	+				+2.7
120,983	+				+2.4
120,983	+				-2.4
120,983	+				-0.4
120,983	+				+0.4
120,983	+				-2.7
120,983	+				-0.6
120,983	+				-0.8
120,983	+				-0.2
120,983	+				-1.3
120,983	+				-0.4
120,983	+				+1.0
120,983	+				-1.1
120,983	+				-1.9
120,983	+				-1.3
120,983	+				+1.9
120,983	+				-1.6
120,983	+				+1.2
120,983	+				+0.1
120,983	+				+2.4
120,984	-				-2.0
120,984	-				-0.7
120,984	-				-1.1
120,984	-				-0.8
120,984	-				-0.9
120,984	-				-0.2
120,984	-				-2.3
120,984	-				-2.2
120,984	-				-2.4
120,984	-				-0.0
120,984	-				+0.4
120,984	-				+0.1
120,984	-				-0.6
120,997	+				-1.4
120,997	+				-1.6
120,997	+				-0.2
120,998	-				-0.1
120,998	-				+0.8
121,227	+		GFF5019	0.64	-0.8
121,228	-		GFF5019	0.64	-0.4
121,249	+		GFF5019	0.69	-0.9
121,274	-		GFF5019	0.75	+0.9
121,297	+		GFF5019	0.81	-0.3
121,339	+				-2.9
121,340	-				-1.9
121,369	+				+1.3
121,369	+				+0.4
121,369	+				+0.6
121,370	-				-0.1
121,370	-				+0.6
121,372	+				-0.3
121,372	+				-0.8
121,372	+				+0.8
121,372	+				+0.3
121,372	+				+1.1
121,372	+				+0.6
121,372	+				-0.3
121,372	+				-0.2
121,372	+				-0.0
121,372	+				-1.9
121,372	+				-0.2
121,372	+				-0.4
121,372	+				-1.8
121,372	+				+1.7
121,372	+				-0.4
121,372	+				-1.1
121,372	+				-1.3
121,372	+				-0.8
121,372	+				-2.7
121,372	+				-1.9
121,372	+				+1.8
121,372	+				-0.6
121,372	+				-2.7
121,372	+				-1.4
121,372	+				+0.1
121,372	+				-2.1
121,372	+				-0.2
121,372	+				-0.4
121,373	-				-0.0
121,373	-				+0.4
121,373	-				-1.9
121,373	-				+1.0
121,373	-				-0.6
121,373	-				+2.1
121,373	-				+0.1
121,373	-				-1.1
121,373	-				-0.1
121,373	-				+0.6
121,373	-				-2.3
121,373	-				-1.1
121,373	-				+0.1
121,373	-				-0.9
121,373	-				+1.5
121,373	-				-0.9
121,373	-				+3.3
121,373	-				-0.4
121,373	-				-1.3
121,373	-				-1.5
121,373	-				+0.3
121,373	-				-2.1
121,551	+				-0.7
121,551	+				-1.7
121,551	+				-1.4
121,551	+				-2.7
121,551	+				-1.8
121,551	+				-1.6
121,551	+				+0.7
121,551	+				-0.4
121,551	+				+0.4
121,551	+				+0.0
121,551	+				+0.3
121,551	+				-1.1
121,552	-				+0.4
121,552	-				-0.0
121,552	-				-3.0
121,552	-				-0.8
121,552	-				+1.2
121,552	-				-0.2
121,552	-				-0.4
121,552	-				+0.4
121,552	-				+0.8
121,552	-				-0.5
121,552	-				+0.5
121,641	-		GFF5020	0.15	-1.8
121,654	+		GFF5020	0.17	+0.9
121,654	+		GFF5020	0.17	+0.3
121,654	+		GFF5020	0.17	-0.3
121,654	+		GFF5020	0.17	-1.0
121,654	+		GFF5020	0.17	-2.9
121,654	+		GFF5020	0.17	-0.6
121,654	+		GFF5020	0.17	+0.3
121,654	+		GFF5020	0.17	-2.4
121,654	+		GFF5020	0.17	-1.2
121,654	+		GFF5020	0.17	+2.2
121,654	+		GFF5020	0.17	-2.9
121,654	+		GFF5020	0.17	+0.3
121,654	+		GFF5020	0.17	+0.5
121,654	+		GFF5020	0.17	+0.9
121,654	+		GFF5020	0.17	-1.1
121,654	+		GFF5020	0.17	-0.4
121,654	+		GFF5020	0.17	-0.8
121,654	+		GFF5020	0.17	-3.3
121,654	+		GFF5020	0.17	+1.5
121,654	+		GFF5020	0.17	-1.5
121,654	+		GFF5020	0.17	-3.0
121,654	+		GFF5020	0.17	-2.3
121,654	+		GFF5020	0.17	-2.5
121,654	+		GFF5020	0.17	+0.7
121,654	+		GFF5020	0.17	+0.5
121,654	+		GFF5020	0.17	+1.4
121,654	+		GFF5020	0.17	+0.4
121,654	+		GFF5020	0.17	+0.2
121,654	+		GFF5020	0.17	-1.0
121,654	+		GFF5020	0.17	-0.4
121,654	+		GFF5020	0.17	+1.2
121,654	+		GFF5020	0.17	+0.2
121,654	+		GFF5020	0.17	-1.9
121,655	-		GFF5020	0.17	-2.9
121,655	-		GFF5020	0.17	-2.4
121,655	-		GFF5020	0.17	-1.9
121,655	-		GFF5020	0.17	+0.5
121,655	-		GFF5020	0.17	+1.7
121,655	-		GFF5020	0.17	+0.4
121,655	-		GFF5020	0.17	-3.8
121,655	-		GFF5020	0.17	+1.0
121,655	-		GFF5020	0.17	-0.2
121,655	-		GFF5020	0.17	-1.4
121,655	-		GFF5020	0.17	+1.1
121,655	-		GFF5020	0.17	-2.7
121,655	-		GFF5020	0.17	-2.7
121,655	-		GFF5020	0.17	+0.9
121,655	-		GFF5020	0.17	-2.8
121,655	-		GFF5020	0.17	-2.4
121,655	-		GFF5020	0.17	+2.4
121,655	-		GFF5020	0.17	-0.6
121,655	-		GFF5020	0.17	+0.4
121,655	-		GFF5020	0.17	+0.6
121,655	-		GFF5020	0.17	+0.1
121,655	-		GFF5020	0.17	+0.4
121,655	-		GFF5020	0.17	+0.4
121,655	-		GFF5020	0.17	+1.3
121,655	-		GFF5020	0.17	-1.4
121,655	-		GFF5020	0.17	-0.4
121,655	-		GFF5020	0.17	-0.6
121,655	-		GFF5020	0.17	+0.4
121,655	-		GFF5020	0.17	-0.8
121,655	-		GFF5020	0.17	-0.6
121,655	-		GFF5020	0.17	-1.1
121,655	-		GFF5020	0.17	-0.8
121,690	+		GFF5020	0.25	-1.3
121,690	+		GFF5020	0.25	-1.3
121,690	+		GFF5020	0.25	+0.1
121,690	+		GFF5020	0.25	-4.1
121,691	-		GFF5020	0.25	-0.4
121,691	-		GFF5020	0.25	-1.1