Strain Fitness in Variovorax sp. SCN45 around GFF5016

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
117,867	+				-0.4
117,867	+				+0.2
117,867	+				-0.3
117,868	-				+0.4
117,868	-				+0.1
117,868	-				+0.1
117,948	+				+0.9
117,949	-				-4.1
117,949	-				-0.8
117,949	-				-3.7
118,095	+				-3.1
118,095	+				+1.3
118,112	+		GFF5015	0.11	+0.4
118,112	+		GFF5015	0.11	+0.4
118,113	-		GFF5015	0.12	-0.9
118,113	-		GFF5015	0.12	+1.2
118,113	-		GFF5015	0.12	+0.9
118,295	+		GFF5015	0.36	-2.5
118,295	+		GFF5015	0.36	-2.8
118,296	-		GFF5015	0.36	+0.8
118,296	-		GFF5015	0.36	+0.4
118,505	+		GFF5015	0.63	-2.6
118,682	+		GFF5015	0.87	-0.6
118,682	+		GFF5015	0.87	-0.7
118,683	-		GFF5015	0.87	+1.9
118,683	-		GFF5015	0.87	+1.6
119,105	+		GFF5016	0.23	+0.8
119,105	+		GFF5016	0.23	-0.4
119,105	+		GFF5016	0.23	-2.1
119,105	+		GFF5016	0.23	-0.5
119,105	+		GFF5016	0.23	-1.3
119,105	+		GFF5016	0.23	-1.7
119,105	+		GFF5016	0.23	-0.7
119,105	+		GFF5016	0.23	-0.9
119,105	+		GFF5016	0.23	+0.6
119,105	+		GFF5016	0.23	+0.4
119,105	+		GFF5016	0.23	-1.9
119,105	+		GFF5016	0.23	+4.4
119,105	+		GFF5016	0.23	-1.9
119,105	+		GFF5016	0.23	+0.8
119,105	+		GFF5016	0.23	-1.3
119,106	-		GFF5016	0.23	-0.9
119,106	-		GFF5016	0.23	-0.1
119,106	-		GFF5016	0.23	-0.4
119,106	-		GFF5016	0.23	+1.5
119,106	-		GFF5016	0.23	+0.4
119,106	-		GFF5016	0.23	+2.4
119,106	-		GFF5016	0.23	-1.5
119,106	-		GFF5016	0.23	-2.5
119,106	-		GFF5016	0.23	+0.4
119,106	-		GFF5016	0.23	-0.4
119,106	-		GFF5016	0.23	-1.8
119,106	-		GFF5016	0.23	-0.7
119,106	-		GFF5016	0.23	-2.3
119,106	-		GFF5016	0.23	-0.7
119,106	-		GFF5016	0.23	-3.1
119,131	+		GFF5016	0.25	-2.6
119,132	+		GFF5016	0.25	-1.3
119,132	+		GFF5016	0.25	+0.1
119,132	+		GFF5016	0.25	-1.1
119,132	+		GFF5016	0.25	-1.1
119,132	+		GFF5016	0.25	-0.1
119,132	+		GFF5016	0.25	-1.2
119,132	+		GFF5016	0.25	-2.0
119,132	+		GFF5016	0.25	-0.6
119,133	-		GFF5016	0.25	+0.2
119,133	-		GFF5016	0.25	-0.4
119,133	-		GFF5016	0.25	-0.8
119,133	-		GFF5016	0.25	-0.4
119,133	-		GFF5016	0.25	-0.6
119,133	-		GFF5016	0.25	-1.3
119,133	-		GFF5016	0.25	-2.1
119,279	+		GFF5016	0.36	+0.1
119,279	+		GFF5016	0.36	-2.6
119,279	+		GFF5016	0.36	-1.4
119,279	+		GFF5016	0.36	-0.5
119,280	-		GFF5016	0.36	+0.4
119,280	-		GFF5016	0.36	-1.2
119,280	-		GFF5016	0.36	-0.7
119,280	-		GFF5016	0.36	-0.5
119,280	-		GFF5016	0.36	+0.1
119,280	-		GFF5016	0.36	+0.4
119,280	-		GFF5016	0.36	+0.6
119,280	-		GFF5016	0.36	-1.8
119,280	-		GFF5016	0.36	-1.6
119,294	+		GFF5016	0.37	-0.8
119,294	+		GFF5016	0.37	+0.4
119,294	+		GFF5016	0.37	-1.2
119,294	+		GFF5016	0.37	-2.0
119,294	+		GFF5016	0.37	+0.5
119,294	+		GFF5016	0.37	-1.6
119,294	+		GFF5016	0.37	-0.3
119,294	+		GFF5016	0.37	+0.2
119,294	+		GFF5016	0.37	+0.4
119,295	-		GFF5016	0.37	-0.6
119,295	-		GFF5016	0.37	-1.6
119,295	-		GFF5016	0.37	+0.2
119,295	-		GFF5016	0.37	-2.2
119,295	-		GFF5016	0.37	+0.4
119,295	-		GFF5016	0.37	+1.4
119,875	+		GFF5016	0.82	+1.4
119,876	-		GFF5016	0.83	-2.5
120,038	+				-0.7
120,038	+				-0.4
120,038	+				-1.6
120,038	+				-3.8
120,039	-				-2.0
120,191	+		GFF5017	0.11	-0.6
120,191	+		GFF5017	0.11	+1.8
120,191	+		GFF5017	0.11	+1.0
120,191	+		GFF5017	0.11	-1.9
120,191	+		GFF5017	0.11	-0.5
120,191	+		GFF5017	0.11	-3.5
120,191	+		GFF5017	0.11	-3.1
120,191	+		GFF5017	0.11	-0.6
120,191	+		GFF5017	0.11	-3.1
120,191	+		GFF5017	0.11	-1.6
120,191	+		GFF5017	0.11	+0.2
120,191	+		GFF5017	0.11	-0.8
120,192	-		GFF5017	0.11	+0.8
120,192	-		GFF5017	0.11	-0.4
120,192	-		GFF5017	0.11	-0.4
120,192	-		GFF5017	0.11	+1.7
120,192	-		GFF5017	0.11	-3.0
120,192	-		GFF5017	0.11	+0.7
120,192	-		GFF5017	0.11	-3.4
120,192	-		GFF5017	0.11	+0.3
120,192	-		GFF5017	0.11	+0.0
120,192	-		GFF5017	0.11	-0.5
120,192	-		GFF5017	0.11	-1.5
120,303	+		GFF5017	0.41	-2.0
120,303	+		GFF5017	0.41	-0.4
120,303	+		GFF5017	0.41	+0.6
120,303	+		GFF5017	0.41	-1.7
120,304	-		GFF5017	0.41	-1.9
120,304	-		GFF5017	0.41	+0.1
120,304	-		GFF5017	0.41	+1.1
120,304	-		GFF5017	0.41	-1.5
120,304	-		GFF5017	0.41	+0.9
120,524	+				-2.5
120,524	+				-1.7
120,525	-				-0.4
120,637	+		GFF5018	0.38	-0.2
120,637	+		GFF5018	0.38	-2.2
120,637	+		GFF5018	0.38	+2.0
120,637	+		GFF5018	0.38	-0.3
120,637	+		GFF5018	0.38	+1.7
120,637	+		GFF5018	0.38	+2.0
120,638	-		GFF5018	0.38	+1.0
120,638	-		GFF5018	0.38	+2.4
120,638	-		GFF5018	0.38	+1.2
120,710	+		GFF5018	0.69	-0.6
120,710	+		GFF5018	0.69	-2.2
120,710	+		GFF5018	0.69	-0.1
120,711	-		GFF5018	0.69	+2.5
120,711	-		GFF5018	0.69	+1.1
120,711	-		GFF5018	0.69	-3.1
120,711	-		GFF5018	0.69	+0.8
120,711	-		GFF5018	0.69	-0.1
120,711	-		GFF5018	0.69	+0.6
120,711	-		GFF5018	0.69	-1.2
120,781	+				+1.4
120,781	+				+2.4
120,781	+				-0.1
120,782	-				+0.1
120,782	-				+2.4
120,821	+				+0.1
120,831	+				+0.4
120,831	+				-0.2
120,831	+				-0.2
120,831	+				+0.9
120,831	+				+1.4
120,831	+				+0.7
120,831	+				-2.1
120,831	+				+1.4
120,831	+				-0.6
120,831	+				-1.7
120,831	+				+0.0
120,831	+				+1.6
120,831	+				+1.4
120,831	+				-1.3
120,831	+				-3.3
120,832	-				-1.4
120,832	-				+1.5
120,832	-				-0.2
120,832	-				+3.0
120,832	-				-0.7
120,832	-				+1.1
120,832	-				-0.4
120,832	-				-1.9
120,832	-				+0.8
120,863	+				-1.0
120,863	+				+1.6
120,863	+				+0.5
120,863	+				+0.4
120,863	+				-2.3
120,864	-				+0.3
120,864	-				+0.2
120,864	-				-1.5
120,868	+				+1.1
120,868	+				-4.4
120,868	+				-2.0
120,868	+				-1.4
120,868	+				+1.8
120,868	+				+1.3
120,869	-				+2.1
120,869	-				-2.3
120,869	-				-0.1
120,869	-				+0.8
120,869	-				+0.8
120,869	-				-2.2
120,951	+				-0.9
120,951	+				+2.7
120,951	+				-2.4
120,951	+				-1.6
120,951	+				-3.0
120,951	+				-0.9
120,951	+				-0.5
120,951	+				-0.5
120,951	+				-0.6
120,951	+				+0.8
120,951	+				-0.9
120,952	-				+0.8
120,952	-				+0.4
120,952	-				-2.2
120,952	-				-2.5
120,979	+				-2.1
120,979	+				+0.8
120,979	+				-1.5
120,979	+				+0.1
120,979	+				+1.4
120,979	+				+0.8
120,979	+				+0.6
120,979	+				-1.3
120,979	+				+1.2
120,979	+				-0.2
120,979	+				-1.5
120,980	-				-0.1
120,980	-				-0.9
120,980	-				+0.5
120,980	-				-0.3
120,980	-				+1.0
120,980	-				+0.0
120,980	-				-2.1
120,980	-				+0.3
120,980	-				+0.5
120,980	-				-1.6
120,980	-				-0.2
120,980	-				-0.2
120,983	+				-3.5
120,983	+				+2.1
120,983	+				-0.6
120,983	+				+0.1
120,983	+				-0.4
120,983	+				-0.7
120,983	+				-1.7
120,983	+				-1.6
120,983	+				+2.7
120,983	+				+2.4
120,983	+				-2.4
120,983	+				-0.4
120,983	+				+0.4
120,983	+				-2.7
120,983	+				-0.6
120,983	+				-0.8
120,983	+				-0.2
120,983	+				-1.3
120,983	+				-0.4
120,983	+				+1.0
120,983	+				-1.1
120,983	+				-1.9
120,983	+				-1.3
120,983	+				+1.9
120,983	+				-1.6
120,983	+				+1.2
120,983	+				+0.1
120,983	+				+2.4
120,984	-				-2.0
120,984	-				-0.7
120,984	-				-1.1
120,984	-				-0.8
120,984	-				-0.9
120,984	-				-0.2
120,984	-				-2.3
120,984	-				-2.2
120,984	-				-2.4
120,984	-				-0.0
120,984	-				+0.4
120,984	-				+0.1
120,984	-				-0.6
120,997	+				-1.4
120,997	+				-1.6
120,997	+				-0.2
120,998	-				-0.1
120,998	-				+0.8