Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4878 and GFF4879 are separated by 280 nucleotides GFF4879 and GFF4880 are separated by 365 nucleotides
GFF4878 - putative lipoprotein, at 246,560 to 246,907
GFF4878
GFF4879 - Transcriptional regulator, Xre family, at 247,188 to 247,424
GFF4879
GFF4880 - y4eB gene in pNGR234a homolog, at 247,790 to 248,104
GFF4880
Position (kb) 247
248
249 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 246.811 kb on - strand, within GFF4878 at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.911 kb on + strand at 246.911 kb on + strand at 246.911 kb on + strand at 246.912 kb on - strand at 246.912 kb on - strand at 246.912 kb on - strand at 246.912 kb on - strand at 246.912 kb on - strand at 246.925 kb on + strand at 246.926 kb on - strand at 247.019 kb on + strand at 247.019 kb on + strand at 247.020 kb on - strand at 247.049 kb on - strand at 247.049 kb on - strand at 247.049 kb on - strand at 247.054 kb on + strand at 247.054 kb on + strand at 247.054 kb on + strand at 247.055 kb on - strand at 247.055 kb on - strand at 247.079 kb on - strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.163 kb on - strand at 247.163 kb on - strand at 247.163 kb on - strand at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.235 kb on + strand, within GFF4879 at 247.235 kb on + strand, within GFF4879 at 247.235 kb on + strand, within GFF4879 at 247.235 kb on + strand, within GFF4879 at 247.235 kb on + strand, within GFF4879 at 247.235 kb on + strand, within GFF4879 at 247.235 kb on + strand, within GFF4879 at 247.236 kb on - strand, within GFF4879 at 247.236 kb on - strand, within GFF4879 at 247.236 kb on - strand, within GFF4879 at 247.236 kb on - strand, within GFF4879 at 247.332 kb on + strand, within GFF4879 at 247.332 kb on + strand, within GFF4879 at 247.332 kb on + strand, within GFF4879 at 247.332 kb on + strand, within GFF4879 at 247.332 kb on + strand, within GFF4879 at 247.332 kb on + strand, within GFF4879 at 247.333 kb on - strand, within GFF4879 at 247.333 kb on - strand, within GFF4879 at 247.333 kb on - strand, within GFF4879 at 247.422 kb on + strand at 247.422 kb on + strand at 247.422 kb on + strand at 247.423 kb on - strand at 247.423 kb on - strand at 247.504 kb on + strand at 247.854 kb on - strand, within GFF4880 at 247.863 kb on + strand, within GFF4880 at 247.863 kb on + strand, within GFF4880 at 247.863 kb on + strand, within GFF4880 at 247.863 kb on + strand, within GFF4880 at 247.864 kb on - strand, within GFF4880 at 247.864 kb on - strand, within GFF4880 at 247.908 kb on + strand, within GFF4880 at 247.908 kb on + strand, within GFF4880 at 247.908 kb on + strand, within GFF4880 at 247.908 kb on + strand, within GFF4880 at 247.908 kb on + strand, within GFF4880 at 247.908 kb on + strand, within GFF4880 at 247.908 kb on + strand, within GFF4880 at 247.908 kb on + strand, within GFF4880 at 247.908 kb on + strand, within GFF4880 at 247.908 kb on + strand, within GFF4880 at 247.908 kb on + strand, within GFF4880 at 247.908 kb on + strand, within GFF4880 at 247.908 kb on + strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 247.909 kb on - strand, within GFF4880 at 248.517 kb on + strand at 248.518 kb on - strand at 248.518 kb on - strand at 248.695 kb on + strand at 248.695 kb on + strand at 248.893 kb on + strand at 248.894 kb on - strand at 248.894 kb on - strand at 248.894 kb on - strand at 248.894 kb on - strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.915 kb on - strand at 248.915 kb on - strand at 248.915 kb on - strand at 248.915 kb on - strand at 248.915 kb on - strand at 249.039 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 246,811 - GFF4878 0.72 +1.9 246,907 + -1.8 246,907 + +2.2 246,907 + -2.3 246,907 + +0.9 246,907 + +0.0 246,907 + +1.5 246,907 + +2.1 246,907 + -0.4 246,907 + +1.3 246,907 + -1.4 246,907 + -2.2 246,907 + +1.3 246,907 + -1.0 246,907 + +0.5 246,907 + -1.2 246,907 + -1.4 246,907 + -0.7 246,907 + -1.3 246,907 + +0.5 246,907 + +0.3 246,907 + -1.3 246,907 + -0.6 246,907 + -2.5 246,907 + +0.4 246,907 + -1.2 246,907 + +0.5 246,907 + -1.5 246,907 + -1.7 246,907 + -0.5 246,908 - -2.7 246,908 - +0.8 246,908 - -1.8 246,908 - -0.2 246,908 - +1.3 246,908 - -2.4 246,908 - -0.5 246,908 - -1.4 246,908 - -1.4 246,908 - -0.9 246,908 - +0.1 246,908 - -2.5 246,908 - -1.0 246,908 - -1.7 246,908 - -0.1 246,908 - +1.6 246,908 - -2.4 246,908 - -2.6 246,908 - -3.0 246,908 - -1.0 246,908 - +0.8 246,908 - -0.1 246,908 - +2.4 246,908 - -0.0 246,908 - -2.8 246,908 - -0.9 246,908 - -0.6 246,908 - +0.0 246,908 - -0.5 246,908 - +1.0 246,908 - +0.1 246,911 + -0.7 246,911 + -1.3 246,911 + -1.4 246,912 - +1.9 246,912 - -0.4 246,912 - -0.3 246,912 - -0.8 246,912 - -1.4 246,925 + -3.0 246,926 - +0.2 247,019 + +0.1 247,019 + +3.4 247,020 - -2.1 247,049 - +0.9 247,049 - +0.3 247,049 - -0.4 247,054 + +0.4 247,054 + -0.9 247,054 + +0.2 247,055 - +1.1 247,055 - -1.7 247,079 - -0.8 247,145 + -2.3 247,145 + -1.7 247,145 + -0.9 247,145 + +0.8 247,145 + +1.1 247,145 + +1.0 247,145 + -1.3 247,145 + +0.3 247,145 + -0.9 247,145 + -0.8 247,145 + -2.9 247,145 + -0.9 247,145 + -3.3 247,145 + +1.6 247,145 + +1.0 247,145 + +3.5 247,145 + -1.2 247,146 - -0.1 247,146 - -0.9 247,146 - -0.9 247,146 - -0.2 247,146 - +1.2 247,146 - +0.3 247,146 - -0.3 247,146 - -0.5 247,146 - +0.5 247,146 - +0.4 247,146 - +0.0 247,146 - -2.1 247,163 - +0.1 247,163 - -0.9 247,163 - -0.9 247,227 + GFF4879 0.16 +1.4 247,227 + GFF4879 0.16 -0.4 247,227 + GFF4879 0.16 +1.0 247,227 + GFF4879 0.16 -0.1 247,227 + GFF4879 0.16 -0.7 247,227 + GFF4879 0.16 -1.5 247,227 + GFF4879 0.16 +0.9 247,227 + GFF4879 0.16 -1.3 247,227 + GFF4879 0.16 -0.9 247,227 + GFF4879 0.16 -0.2 247,227 + GFF4879 0.16 -2.6 247,227 + GFF4879 0.16 +0.8 247,227 + GFF4879 0.16 +2.1 247,227 + GFF4879 0.16 +0.9 247,227 + GFF4879 0.16 -0.4 247,227 + GFF4879 0.16 -1.2 247,227 + GFF4879 0.16 -2.9 247,227 + GFF4879 0.16 -1.4 247,227 + GFF4879 0.16 +0.3 247,227 + GFF4879 0.16 +0.3 247,227 + GFF4879 0.16 -1.8 247,227 + GFF4879 0.16 -0.2 247,228 - GFF4879 0.17 -0.5 247,228 - GFF4879 0.17 -0.9 247,228 - GFF4879 0.17 +0.9 247,228 - GFF4879 0.17 -1.0 247,228 - GFF4879 0.17 -2.1 247,228 - GFF4879 0.17 +0.1 247,228 - GFF4879 0.17 -0.4 247,228 - GFF4879 0.17 -0.3 247,228 - GFF4879 0.17 -0.5 247,228 - GFF4879 0.17 +0.7 247,228 - GFF4879 0.17 +0.9 247,228 - GFF4879 0.17 +1.3 247,228 - GFF4879 0.17 -1.6 247,228 - GFF4879 0.17 -2.4 247,228 - GFF4879 0.17 -1.2 247,228 - GFF4879 0.17 -1.3 247,228 - GFF4879 0.17 -0.9 247,235 + GFF4879 0.20 -0.4 247,235 + GFF4879 0.20 -0.7 247,235 + GFF4879 0.20 -0.9 247,235 + GFF4879 0.20 +0.3 247,235 + GFF4879 0.20 -0.1 247,235 + GFF4879 0.20 -1.1 247,235 + GFF4879 0.20 +2.8 247,236 - GFF4879 0.20 -2.4 247,236 - GFF4879 0.20 -2.0 247,236 - GFF4879 0.20 +1.5 247,236 - GFF4879 0.20 +1.0 247,332 + GFF4879 0.61 -2.5 247,332 + GFF4879 0.61 -1.7 247,332 + GFF4879 0.61 -0.6 247,332 + GFF4879 0.61 +0.5 247,332 + GFF4879 0.61 -0.1 247,332 + GFF4879 0.61 +0.7 247,333 - GFF4879 0.61 -1.8 247,333 - GFF4879 0.61 -2.3 247,333 - GFF4879 0.61 +0.4 247,422 + -0.5 247,422 + -2.1 247,422 + -0.7 247,423 - +0.7 247,423 - -0.3 247,504 + -1.7 247,854 - GFF4880 0.20 -2.0 247,863 + GFF4880 0.23 +1.9 247,863 + GFF4880 0.23 -0.9 247,863 + GFF4880 0.23 +0.2 247,863 + GFF4880 0.23 -0.4 247,864 - GFF4880 0.23 +1.1 247,864 - GFF4880 0.23 +1.0 247,908 + GFF4880 0.37 +0.4 247,908 + GFF4880 0.37 -0.2 247,908 + GFF4880 0.37 -2.3 247,908 + GFF4880 0.37 -2.7 247,908 + GFF4880 0.37 -2.7 247,908 + GFF4880 0.37 +1.9 247,908 + GFF4880 0.37 -0.7 247,908 + GFF4880 0.37 -2.0 247,908 + GFF4880 0.37 -0.8 247,908 + GFF4880 0.37 -0.5 247,908 + GFF4880 0.37 +2.6 247,908 + GFF4880 0.37 -0.7 247,908 + GFF4880 0.37 -0.5 247,909 - GFF4880 0.38 -1.8 247,909 - GFF4880 0.38 -1.4 247,909 - GFF4880 0.38 +1.9 247,909 - GFF4880 0.38 +1.6 247,909 - GFF4880 0.38 +0.8 247,909 - GFF4880 0.38 -0.2 247,909 - GFF4880 0.38 +2.4 247,909 - GFF4880 0.38 +0.2 247,909 - GFF4880 0.38 +0.3 247,909 - GFF4880 0.38 +0.3 247,909 - GFF4880 0.38 -0.9 247,909 - GFF4880 0.38 -2.2 247,909 - GFF4880 0.38 -1.7 247,909 - GFF4880 0.38 -1.7 247,909 - GFF4880 0.38 +0.3 248,517 + +1.0 248,518 - -2.7 248,518 - +2.5 248,695 + -0.7 248,695 + +1.9 248,893 + -0.9 248,894 - +1.1 248,894 - -0.4 248,894 - +1.2 248,894 - -0.9 248,914 + +0.3 248,914 + -2.8 248,914 + +1.3 248,914 + -1.7 248,914 + +3.2 248,914 + -0.1 248,914 + +1.2 248,915 - -0.4 248,915 - -1.9 248,915 - +0.9 248,915 - +0.0 248,915 - -0.4 249,039 - -1.1
Or see this region's nucleotide sequence