Strain Fitness in Variovorax sp. SCN45 around GFF4846

Experiment: Community=Kojac gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4844 and GFF4845 are separated by 12 nucleotidesGFF4845 and GFF4846 overlap by 4 nucleotidesGFF4846 and GFF4847 are separated by 19 nucleotidesGFF4847 and GFF4848 overlap by 4 nucleotidesGFF4848 and GFF4849 overlap by 4 nucleotides GFF4844 - Conjugative transfer protein TrbL, at 213,520 to 214,872 GFF4844 GFF4845 - Conjugative transfer protein TrbJ, at 214,885 to 215,640 GFF4845 GFF4846 - Conjugative transfer protein TrbE, at 215,637 to 218,114 GFF4846 GFF4847 - Conjugative transfer protein TrbD, at 218,134 to 218,418 GFF4847 GFF4848 - Conjugative transfer protein TrbC, at 218,415 to 218,807 GFF4848 GFF4849 - Conjugative transfer protein TrbB, at 218,804 to 219,841 GFF4849 Position (kb) 215 216 217 218 219Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 214.646 kb on + strand, within GFF4844at 214.646 kb on + strand, within GFF4844at 214.646 kb on + strand, within GFF4844at 214.647 kb on - strand, within GFF4844at 214.647 kb on - strand, within GFF4844at 214.647 kb on - strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.666 kb on + strand, within GFF4844at 214.666 kb on + strand, within GFF4844at 214.666 kb on + strand, within GFF4844at 214.666 kb on + strand, within GFF4844at 214.666 kb on + strand, within GFF4844at 214.666 kb on + strand, within GFF4844at 214.666 kb on + strand, within GFF4844at 214.667 kb on - strand, within GFF4844at 214.667 kb on - strand, within GFF4844at 214.667 kb on - strand, within GFF4844at 214.823 kb on + strandat 214.824 kb on - strandat 214.895 kb on + strandat 214.896 kb on - strandat 214.919 kb on + strandat 214.919 kb on + strandat 214.920 kb on - strandat 215.243 kb on + strand, within GFF4845at 215.243 kb on + strand, within GFF4845at 215.243 kb on + strand, within GFF4845at 215.244 kb on - strand, within GFF4845at 215.244 kb on - strand, within GFF4845at 215.244 kb on - strand, within GFF4845at 215.244 kb on - strand, within GFF4845at 215.273 kb on + strand, within GFF4845at 215.273 kb on + strand, within GFF4845at 215.273 kb on + strand, within GFF4845at 215.273 kb on + strand, within GFF4845at 215.273 kb on + strand, within GFF4845at 215.274 kb on - strand, within GFF4845at 215.274 kb on - strand, within GFF4845at 215.274 kb on - strand, within GFF4845at 215.274 kb on - strand, within GFF4845at 215.286 kb on - strand, within GFF4845at 215.324 kb on + strand, within GFF4845at 215.912 kb on - strand, within GFF4846at 215.912 kb on - strand, within GFF4846at 215.912 kb on - strand, within GFF4846at 215.912 kb on - strand, within GFF4846at 215.912 kb on - strand, within GFF4846at 215.912 kb on - strand, within GFF4846at 215.914 kb on + strand, within GFF4846at 215.981 kb on - strand, within GFF4846at 215.981 kb on - strand, within GFF4846at 215.981 kb on - strand, within GFF4846at 215.981 kb on - strand, within GFF4846at 215.981 kb on - strand, within GFF4846at 216.254 kb on - strand, within GFF4846at 216.254 kb on - strand, within GFF4846at 216.254 kb on - strand, within GFF4846at 216.382 kb on + strand, within GFF4846at 216.382 kb on + strand, within GFF4846at 216.382 kb on + strand, within GFF4846at 216.383 kb on - strand, within GFF4846at 216.383 kb on - strand, within GFF4846at 216.383 kb on - strand, within GFF4846at 216.491 kb on + strand, within GFF4846at 216.492 kb on - strand, within GFF4846at 216.634 kb on + strand, within GFF4846at 216.634 kb on + strand, within GFF4846at 216.634 kb on + strand, within GFF4846at 216.635 kb on - strand, within GFF4846at 216.635 kb on - strand, within GFF4846at 216.635 kb on - strand, within GFF4846at 216.767 kb on + strand, within GFF4846at 216.965 kb on - strand, within GFF4846at 216.965 kb on - strand, within GFF4846at 217.124 kb on - strand, within GFF4846at 217.141 kb on + strand, within GFF4846at 217.337 kb on + strand, within GFF4846at 217.338 kb on - strand, within GFF4846at 217.338 kb on - strand, within GFF4846at 217.338 kb on - strand, within GFF4846at 217.538 kb on + strand, within GFF4846at 217.538 kb on + strand, within GFF4846at 217.539 kb on - strand, within GFF4846at 217.558 kb on + strand, within GFF4846at 217.558 kb on + strand, within GFF4846at 217.558 kb on + strand, within GFF4846at 217.558 kb on + strand, within GFF4846at 217.558 kb on + strand, within GFF4846at 217.559 kb on - strand, within GFF4846at 217.575 kb on - strand, within GFF4846at 217.696 kb on + strand, within GFF4846at 217.696 kb on + strand, within GFF4846at 217.696 kb on + strand, within GFF4846at 217.741 kb on + strand, within GFF4846at 217.741 kb on + strand, within GFF4846at 217.741 kb on + strand, within GFF4846at 217.741 kb on + strand, within GFF4846at 217.742 kb on - strand, within GFF4846at 217.742 kb on - strand, within GFF4846at 217.742 kb on - strand, within GFF4846at 217.742 kb on - strand, within GFF4846at 217.760 kb on - strand, within GFF4846at 217.943 kb on + strandat 217.943 kb on + strandat 217.943 kb on + strandat 217.943 kb on + strandat 217.943 kb on + strandat 217.943 kb on + strandat 217.944 kb on - strandat 217.944 kb on - strandat 217.944 kb on - strandat 217.944 kb on - strandat 218.021 kb on + strandat 218.021 kb on + strandat 218.022 kb on - strandat 218.022 kb on - strandat 218.022 kb on - strandat 218.119 kb on + strandat 218.119 kb on + strandat 218.120 kb on - strandat 218.135 kb on + strandat 218.136 kb on - strandat 218.136 kb on - strandat 218.163 kb on + strand, within GFF4847at 218.164 kb on - strand, within GFF4847at 218.419 kb on - strandat 218.419 kb on - strandat 218.777 kb on + strandat 218.902 kb on - strandat 218.902 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
remove
214,646 + GFF4844 0.83 -2.4
214,646 + GFF4844 0.83 -0.4
214,646 + GFF4844 0.83 -1.9
214,647 - GFF4844 0.83 -2.7
214,647 - GFF4844 0.83 +2.2
214,647 - GFF4844 0.83 -0.4
214,664 + GFF4844 0.85 -0.2
214,664 + GFF4844 0.85 +0.1
214,664 + GFF4844 0.85 -1.4
214,664 + GFF4844 0.85 -0.4
214,664 + GFF4844 0.85 +0.1
214,664 + GFF4844 0.85 -0.7
214,664 + GFF4844 0.85 -0.8
214,664 + GFF4844 0.85 +0.8
214,664 + GFF4844 0.85 +0.2
214,664 + GFF4844 0.85 -2.8
214,664 + GFF4844 0.85 -0.6
214,664 + GFF4844 0.85 -1.9
214,664 + GFF4844 0.85 -0.1
214,665 - GFF4844 0.85 -0.9
214,665 - GFF4844 0.85 -1.1
214,665 - GFF4844 0.85 +0.9
214,665 - GFF4844 0.85 -2.2
214,665 - GFF4844 0.85 +0.6
214,665 - GFF4844 0.85 -1.7
214,665 - GFF4844 0.85 -2.0
214,665 - GFF4844 0.85 -0.1
214,665 - GFF4844 0.85 +0.2
214,665 - GFF4844 0.85 -1.1
214,665 - GFF4844 0.85 +0.7
214,665 - GFF4844 0.85 -0.2
214,665 - GFF4844 0.85 -0.5
214,665 - GFF4844 0.85 -0.4
214,665 - GFF4844 0.85 -1.4
214,665 - GFF4844 0.85 +0.1
214,665 - GFF4844 0.85 -1.1
214,665 - GFF4844 0.85 -0.6
214,665 - GFF4844 0.85 -0.3
214,665 - GFF4844 0.85 -1.4
214,665 - GFF4844 0.85 +0.2
214,665 - GFF4844 0.85 +0.0
214,665 - GFF4844 0.85 +0.7
214,665 - GFF4844 0.85 -0.7
214,665 - GFF4844 0.85 -2.1
214,666 + GFF4844 0.85 -2.4
214,666 + GFF4844 0.85 +3.9
214,666 + GFF4844 0.85 -1.6
214,666 + GFF4844 0.85 -1.9
214,666 + GFF4844 0.85 -1.4
214,666 + GFF4844 0.85 +2.5
214,666 + GFF4844 0.85 +0.3
214,667 - GFF4844 0.85 +1.3
214,667 - GFF4844 0.85 -0.5
214,667 - GFF4844 0.85 +0.5
214,823 + +2.7
214,824 - -0.9
214,895 + -2.5
214,896 - -1.5
214,919 + -0.1
214,919 + +0.1
214,920 - -1.1
215,243 + GFF4845 0.47 -1.3
215,243 + GFF4845 0.47 -0.7
215,243 + GFF4845 0.47 +0.4
215,244 - GFF4845 0.47 -0.7
215,244 - GFF4845 0.47 -0.2
215,244 - GFF4845 0.47 -0.6
215,244 - GFF4845 0.47 -1.1
215,273 + GFF4845 0.51 -1.8
215,273 + GFF4845 0.51 -3.3
215,273 + GFF4845 0.51 -0.8
215,273 + GFF4845 0.51 -0.6
215,273 + GFF4845 0.51 -0.5
215,274 - GFF4845 0.51 -0.9
215,274 - GFF4845 0.51 +1.1
215,274 - GFF4845 0.51 +0.3
215,274 - GFF4845 0.51 +2.6
215,286 - GFF4845 0.53 -2.7
215,324 + GFF4845 0.58 +0.9
215,912 - GFF4846 0.11 +0.6
215,912 - GFF4846 0.11 +1.0
215,912 - GFF4846 0.11 -2.3
215,912 - GFF4846 0.11 +0.2
215,912 - GFF4846 0.11 +0.2
215,912 - GFF4846 0.11 -0.4
215,914 + GFF4846 0.11 +1.2
215,981 - GFF4846 0.14 +1.4
215,981 - GFF4846 0.14 -1.7
215,981 - GFF4846 0.14 +0.6
215,981 - GFF4846 0.14 +0.3
215,981 - GFF4846 0.14 +0.7
216,254 - GFF4846 0.25 +0.4
216,254 - GFF4846 0.25 -1.7
216,254 - GFF4846 0.25 -2.5
216,382 + GFF4846 0.30 +0.3
216,382 + GFF4846 0.30 -1.5
216,382 + GFF4846 0.30 -1.7
216,383 - GFF4846 0.30 +0.9
216,383 - GFF4846 0.30 +0.1
216,383 - GFF4846 0.30 +1.3
216,491 + GFF4846 0.34 +2.5
216,492 - GFF4846 0.35 -0.1
216,634 + GFF4846 0.40 +0.2
216,634 + GFF4846 0.40 -1.3
216,634 + GFF4846 0.40 -2.4
216,635 - GFF4846 0.40 -0.1
216,635 - GFF4846 0.40 +1.2
216,635 - GFF4846 0.40 -0.6
216,767 + GFF4846 0.46 -0.4
216,965 - GFF4846 0.54 -1.1
216,965 - GFF4846 0.54 +1.9
217,124 - GFF4846 0.60 -1.7
217,141 + GFF4846 0.61 -2.3
217,337 + GFF4846 0.69 -0.1
217,338 - GFF4846 0.69 -0.4
217,338 - GFF4846 0.69 -0.0
217,338 - GFF4846 0.69 -1.2
217,538 + GFF4846 0.77 -2.2
217,538 + GFF4846 0.77 -2.3
217,539 - GFF4846 0.77 +0.5
217,558 + GFF4846 0.78 -0.4
217,558 + GFF4846 0.78 +0.5
217,558 + GFF4846 0.78 -0.2
217,558 + GFF4846 0.78 -0.4
217,558 + GFF4846 0.78 +0.4
217,559 - GFF4846 0.78 -0.5
217,575 - GFF4846 0.78 +0.1
217,696 + GFF4846 0.83 -0.1
217,696 + GFF4846 0.83 -0.3
217,696 + GFF4846 0.83 -1.3
217,741 + GFF4846 0.85 +2.0
217,741 + GFF4846 0.85 +0.5
217,741 + GFF4846 0.85 -0.9
217,741 + GFF4846 0.85 -2.6
217,742 - GFF4846 0.85 +1.0
217,742 - GFF4846 0.85 -1.7
217,742 - GFF4846 0.85 -1.7
217,742 - GFF4846 0.85 -0.5
217,760 - GFF4846 0.86 +1.9
217,943 + -1.4
217,943 + +0.2
217,943 + -1.4
217,943 + +0.5
217,943 + -4.9
217,943 + -1.8
217,944 - +0.1
217,944 - +1.1
217,944 - -2.8
217,944 - -1.4
218,021 + +0.3
218,021 + -2.3
218,022 - -0.5
218,022 - +0.4
218,022 - -0.8
218,119 + -1.0
218,119 + -0.7
218,120 - -3.7
218,135 + +0.5
218,136 - +0.9
218,136 - -0.9
218,163 + GFF4847 0.10 +1.6
218,164 - GFF4847 0.11 +0.5
218,419 - -2.0
218,419 - -1.3
218,777 + +1.9
218,902 - -0.1
218,902 - -1.5

Or see this region's nucleotide sequence