Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4779 and GFF4780 are separated by 76 nucleotides GFF4780 and GFF4781 are separated by 93 nucleotides
GFF4779 - Broad-specificity amino acid ABC transporter, permease protein 2, at 146,784 to 147,776
GFF4779
GFF4780 - hypothetical protein, at 147,853 to 148,308
GFF4780
GFF4781 - AttH component of AttEFGH ABC transport system, at 148,402 to 149,469
GFF4781
Position (kb) 147
148
149 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 146.982 kb on + strand, within GFF4779 at 146.982 kb on + strand, within GFF4779 at 147.108 kb on + strand, within GFF4779 at 147.108 kb on + strand, within GFF4779 at 147.255 kb on + strand, within GFF4779 at 147.255 kb on + strand, within GFF4779 at 147.255 kb on + strand, within GFF4779 at 147.255 kb on + strand, within GFF4779 at 147.255 kb on + strand, within GFF4779 at 147.255 kb on + strand, within GFF4779 at 147.256 kb on - strand, within GFF4779 at 147.256 kb on - strand, within GFF4779 at 147.258 kb on + strand, within GFF4779 at 147.258 kb on + strand, within GFF4779 at 147.258 kb on + strand, within GFF4779 at 147.258 kb on + strand, within GFF4779 at 147.258 kb on + strand, within GFF4779 at 147.258 kb on + strand, within GFF4779 at 147.259 kb on - strand, within GFF4779 at 147.259 kb on - strand, within GFF4779 at 147.259 kb on - strand, within GFF4779 at 147.259 kb on - strand, within GFF4779 at 147.774 kb on + strand at 147.775 kb on - strand at 147.775 kb on - strand at 147.775 kb on - strand at 148.053 kb on - strand, within GFF4780 at 148.053 kb on - strand, within GFF4780 at 148.058 kb on + strand, within GFF4780 at 148.058 kb on + strand, within GFF4780 at 148.059 kb on - strand, within GFF4780 at 148.100 kb on + strand, within GFF4780 at 148.100 kb on + strand, within GFF4780 at 148.100 kb on + strand, within GFF4780 at 148.100 kb on + strand, within GFF4780 at 148.101 kb on - strand, within GFF4780 at 148.308 kb on + strand at 148.343 kb on + strand at 148.386 kb on + strand at 148.386 kb on + strand at 148.387 kb on - strand at 148.387 kb on - strand at 148.387 kb on - strand at 148.394 kb on + strand at 148.394 kb on + strand at 148.394 kb on + strand at 148.395 kb on - strand at 148.395 kb on - strand at 148.395 kb on - strand at 148.403 kb on + strand at 148.403 kb on + strand at 148.403 kb on + strand at 148.404 kb on - strand at 148.404 kb on - strand at 148.404 kb on - strand at 148.919 kb on + strand, within GFF4781 at 148.919 kb on + strand, within GFF4781 at 148.920 kb on - strand, within GFF4781 at 148.920 kb on - strand, within GFF4781 at 148.922 kb on + strand, within GFF4781 at 148.922 kb on + strand, within GFF4781 at 148.923 kb on - strand, within GFF4781 at 148.923 kb on - strand, within GFF4781 at 148.923 kb on - strand, within GFF4781 at 148.923 kb on - strand, within GFF4781 at 148.925 kb on + strand, within GFF4781 at 148.925 kb on + strand, within GFF4781 at 148.925 kb on + strand, within GFF4781 at 148.926 kb on - strand, within GFF4781 at 148.926 kb on - strand, within GFF4781 at 148.926 kb on - strand, within GFF4781 at 148.926 kb on - strand, within GFF4781 at 149.048 kb on + strand, within GFF4781 at 149.049 kb on - strand, within GFF4781 at 149.264 kb on + strand, within GFF4781
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 146,982 + GFF4779 0.20 -2.3 146,982 + GFF4779 0.20 -0.1 147,108 + GFF4779 0.33 -1.8 147,108 + GFF4779 0.33 +0.1 147,255 + GFF4779 0.47 -0.1 147,255 + GFF4779 0.47 -0.6 147,255 + GFF4779 0.47 -1.1 147,255 + GFF4779 0.47 -0.7 147,255 + GFF4779 0.47 -1.3 147,255 + GFF4779 0.47 -2.4 147,256 - GFF4779 0.48 -2.0 147,256 - GFF4779 0.48 +0.2 147,258 + GFF4779 0.48 -2.1 147,258 + GFF4779 0.48 -2.7 147,258 + GFF4779 0.48 -0.9 147,258 + GFF4779 0.48 -1.4 147,258 + GFF4779 0.48 -1.7 147,258 + GFF4779 0.48 -0.7 147,259 - GFF4779 0.48 +0.3 147,259 - GFF4779 0.48 -0.1 147,259 - GFF4779 0.48 +0.8 147,259 - GFF4779 0.48 -0.1 147,774 + +0.2 147,775 - -0.1 147,775 - -3.3 147,775 - +3.2 148,053 - GFF4780 0.44 +0.9 148,053 - GFF4780 0.44 -0.4 148,058 + GFF4780 0.45 -0.6 148,058 + GFF4780 0.45 +0.1 148,059 - GFF4780 0.45 -0.7 148,100 + GFF4780 0.54 -0.9 148,100 + GFF4780 0.54 -1.8 148,100 + GFF4780 0.54 -0.3 148,100 + GFF4780 0.54 +0.6 148,101 - GFF4780 0.54 -1.4 148,308 + -1.6 148,343 + +0.9 148,386 + -2.8 148,386 + -1.3 148,387 - +0.1 148,387 - +0.5 148,387 - -0.1 148,394 + +0.5 148,394 + +1.3 148,394 + +0.4 148,395 - -0.1 148,395 - -3.1 148,395 - -2.4 148,403 + +1.0 148,403 + +0.5 148,403 + +0.4 148,404 - -1.6 148,404 - +0.3 148,404 - -1.0 148,919 + GFF4781 0.48 -0.3 148,919 + GFF4781 0.48 -0.9 148,920 - GFF4781 0.49 -0.9 148,920 - GFF4781 0.49 -1.5 148,922 + GFF4781 0.49 -1.1 148,922 + GFF4781 0.49 -0.4 148,923 - GFF4781 0.49 -0.9 148,923 - GFF4781 0.49 -1.8 148,923 - GFF4781 0.49 -0.3 148,923 - GFF4781 0.49 -2.1 148,925 + GFF4781 0.49 +0.8 148,925 + GFF4781 0.49 -2.0 148,925 + GFF4781 0.49 +1.9 148,926 - GFF4781 0.49 -3.5 148,926 - GFF4781 0.49 -0.3 148,926 - GFF4781 0.49 -0.7 148,926 - GFF4781 0.49 -2.4 149,048 + GFF4781 0.60 +1.1 149,049 - GFF4781 0.61 -1.0 149,264 + GFF4781 0.81 -0.6
Or see this region's nucleotide sequence