Strain Fitness in Variovorax sp. SCN45 around GFF4771

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
137,602	+		GFF4770	0.28	-1.5
137,603	-		GFF4770	0.28	-0.6
137,603	-		GFF4770	0.28	-2.7
137,603	-		GFF4770	0.28	-0.5
137,917	+		GFF4770	0.52	-1.9
137,917	+		GFF4770	0.52	+0.7
137,917	+		GFF4770	0.52	+1.2
137,918	-		GFF4770	0.52	+0.3
137,918	-		GFF4770	0.52	+1.1
137,962	+		GFF4770	0.56	-1.1
137,962	+		GFF4770	0.56	-0.9
137,963	-		GFF4770	0.56	+0.7
137,963	-		GFF4770	0.56	-2.5
138,124	+		GFF4770	0.68	-1.0
138,124	+		GFF4770	0.68	+2.4
138,125	-		GFF4770	0.68	-0.5
138,125	-		GFF4770	0.68	+0.3
138,142	+		GFF4770	0.69	-2.7
138,143	-		GFF4770	0.69	+1.9
138,143	-		GFF4770	0.69	+0.8
138,143	-		GFF4770	0.69	-0.9
138,397	+		GFF4770	0.88	-0.4
138,398	-		GFF4770	0.89	+0.3
138,398	-		GFF4770	0.89	+1.4
138,398	-		GFF4770	0.89	+0.5
138,573	+				-0.5
138,573	+				-1.5
138,574	-				+0.2
138,621	+				+1.0
138,621	+				-1.3
138,621	+				+0.9
138,621	+				-1.2
138,621	+				-2.1
138,621	+				-1.7
138,621	+				-0.8
138,621	+				+1.5
138,621	+				+1.0
138,621	+				+1.3
138,621	+				+0.2
138,622	-				+1.9
138,622	-				-0.7
138,622	-				-1.3
138,622	-				-1.7
138,622	-				-3.2
138,622	-				+0.6
138,622	-				-0.7
138,622	-				+2.5
138,786	-		GFF4771	0.12	-0.9
138,786	-		GFF4771	0.12	+1.7
138,786	-		GFF4771	0.12	-0.1
138,786	-		GFF4771	0.12	+0.9
139,011	+		GFF4771	0.26	-1.1
139,011	+		GFF4771	0.26	+0.2
139,134	+		GFF4771	0.34	-3.1
139,135	-		GFF4771	0.34	+0.2
139,135	-		GFF4771	0.34	+1.3
139,135	-		GFF4771	0.34	+0.2
139,135	-		GFF4771	0.34	+0.6
139,135	-		GFF4771	0.34	-0.9
139,185	+		GFF4771	0.37	+0.8
139,186	-		GFF4771	0.37	-1.7
139,186	-		GFF4771	0.37	+0.7
139,186	-		GFF4771	0.37	+1.7
139,186	-		GFF4771	0.37	-3.5
139,462	-		GFF4771	0.55	+1.0
139,462	-		GFF4771	0.55	+1.3
139,462	-		GFF4771	0.55	-1.9
139,521	+		GFF4771	0.59	-1.3
139,521	+		GFF4771	0.59	-1.1
139,522	-		GFF4771	0.59	-0.6
139,626	+		GFF4771	0.66	+0.8
140,034	+				+0.8
140,034	+				-1.3
140,034	+				-1.3
140,034	+				-0.2
140,034	+				+0.5
140,035	-				-0.4
140,035	-				-2.3
140,035	-				+1.3
140,061	+				+1.0
140,061	+				+1.0
140,061	+				+0.2
140,062	-				+0.5
140,062	-				-1.7
140,062	-				-1.2
140,062	-				+1.6
140,062	-				+0.1
140,062	-				-0.4
140,257	+				-0.1
140,257	+				-1.3
140,257	+				+0.7
140,257	+				-1.4
140,278	+				+0.8
140,278	+				+0.3
140,386	+		GFF4772	0.14	-0.8
140,404	+		GFF4772	0.15	-0.1
140,404	+		GFF4772	0.15	+1.2
140,405	-		GFF4772	0.15	-0.2
140,405	-		GFF4772	0.15	+0.3
140,405	-		GFF4772	0.15	-0.0
140,417	-		GFF4772	0.16	-2.0
140,417	-		GFF4772	0.16	-2.0
140,485	+		GFF4772	0.22	+1.3
140,485	+		GFF4772	0.22	-0.9
140,486	-		GFF4772	0.22	+1.7
140,486	-		GFF4772	0.22	+2.0
140,486	-		GFF4772	0.22	+0.8
140,486	-		GFF4772	0.22	-1.1
140,486	-		GFF4772	0.22	-1.1
140,528	-		GFF4772	0.25	-0.9
140,732	-		GFF4772	0.42	+2.1
140,732	-		GFF4772	0.42	-1.5
140,732	-		GFF4772	0.42	+0.9
140,761	+		GFF4772	0.45	-1.6
140,761	+		GFF4772	0.45	-2.7
140,866	+		GFF4772	0.53	+1.3
140,867	-		GFF4772	0.54	+2.3
140,957	-		GFF4772	0.61	+1.0
141,085	+		GFF4772	0.72	+0.0
141,085	+		GFF4772	0.72	-0.1
141,086	-		GFF4772	0.72	-0.3
141,148	+		GFF4772	0.77	-0.3
141,149	-		GFF4772	0.77	+1.0
141,149	-		GFF4772	0.77	-2.6