Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4763 and GFF4764 are separated by 15 nucleotides GFF4764 and GFF4765 are separated by 7 nucleotides GFF4765 and GFF4766 are separated by 7 nucleotides
GFF4763 - NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3), at 130,397 to 131,884
GFF4763
GFF4764 - Putative transmembrane protein, at 131,900 to 132,205
GFF4764
GFF4765 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 132,213 to 132,830
GFF4765
GFF4766 - identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676, at 132,838 to 133,302
GFF4766
Position (kb) 131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 131.852 kb on + strand at 132.126 kb on - strand, within GFF4764 at 132.341 kb on + strand, within GFF4765 at 132.341 kb on + strand, within GFF4765 at 132.341 kb on + strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.357 kb on + strand, within GFF4765 at 132.358 kb on - strand, within GFF4765 at 132.358 kb on - strand, within GFF4765 at 132.538 kb on - strand, within GFF4765 at 132.538 kb on - strand, within GFF4765 at 132.588 kb on + strand, within GFF4765 at 132.589 kb on - strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.612 kb on + strand, within GFF4765 at 132.612 kb on + strand, within GFF4765 at 132.612 kb on + strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 133.174 kb on + strand, within GFF4766
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 131,852 + -1.1 132,126 - GFF4764 0.74 +0.3 132,341 + GFF4765 0.21 +1.3 132,341 + GFF4765 0.21 -1.1 132,341 + GFF4765 0.21 +1.8 132,342 - GFF4765 0.21 -2.7 132,342 - GFF4765 0.21 -0.0 132,342 - GFF4765 0.21 -1.4 132,342 - GFF4765 0.21 -1.5 132,342 - GFF4765 0.21 -2.1 132,342 - GFF4765 0.21 -0.1 132,357 + GFF4765 0.23 -0.4 132,358 - GFF4765 0.23 -1.1 132,358 - GFF4765 0.23 -2.1 132,538 - GFF4765 0.53 -1.3 132,538 - GFF4765 0.53 +3.5 132,588 + GFF4765 0.61 -1.4 132,589 - GFF4765 0.61 -1.5 132,608 + GFF4765 0.64 -0.5 132,608 + GFF4765 0.64 -2.7 132,608 + GFF4765 0.64 +0.6 132,608 + GFF4765 0.64 -1.2 132,608 + GFF4765 0.64 -0.7 132,608 + GFF4765 0.64 +0.2 132,608 + GFF4765 0.64 +0.0 132,608 + GFF4765 0.64 +0.8 132,608 + GFF4765 0.64 -1.3 132,608 + GFF4765 0.64 -1.8 132,608 + GFF4765 0.64 +0.7 132,609 - GFF4765 0.64 +0.9 132,609 - GFF4765 0.64 -0.4 132,609 - GFF4765 0.64 -0.6 132,609 - GFF4765 0.64 -1.1 132,609 - GFF4765 0.64 +0.6 132,609 - GFF4765 0.64 -1.0 132,609 - GFF4765 0.64 -3.5 132,609 - GFF4765 0.64 -0.4 132,609 - GFF4765 0.64 -1.4 132,609 - GFF4765 0.64 -1.1 132,609 - GFF4765 0.64 -0.3 132,612 + GFF4765 0.65 -0.7 132,612 + GFF4765 0.65 -0.9 132,612 + GFF4765 0.65 -0.5 132,613 - GFF4765 0.65 -3.6 132,613 - GFF4765 0.65 -0.0 132,613 - GFF4765 0.65 -1.3 132,613 - GFF4765 0.65 +0.8 132,613 - GFF4765 0.65 +0.4 133,174 + GFF4766 0.72 -2.0
Or see this region's nucleotide sequence