Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF45 and GFF46 are separated by 103 nucleotides GFF46 and GFF47 are separated by 24 nucleotides GFF47 and GFF48 overlap by 4 nucleotides
GFF45 - Phospholipase C (EC 3.1.4.3), at 47,173 to 49,449
GFF45
GFF46 - Transcriptional regulators of sugar metabolism, at 49,553 to 50,329
GFF46
GFF47 - DNA double-strand break repair Rad50 ATPase, at 50,354 to 52,993
GFF47
GFF48 - DNA double-strand break repair protein Mre11, at 52,990 to 54,117
GFF48
Position (kb) 50
51
52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 49.369 kb on + strand at 49.370 kb on - strand at 49.370 kb on - strand at 49.370 kb on - strand at 49.373 kb on - strand at 49.511 kb on - strand at 49.511 kb on - strand at 50.222 kb on + strand, within GFF46 at 50.222 kb on + strand, within GFF46 at 50.223 kb on - strand, within GFF46 at 50.356 kb on - strand at 50.445 kb on + strand at 50.445 kb on + strand at 50.445 kb on + strand at 50.445 kb on + strand at 50.445 kb on + strand at 50.551 kb on - strand at 50.709 kb on + strand, within GFF47 at 50.710 kb on - strand, within GFF47 at 52.311 kb on + strand, within GFF47 at 52.312 kb on - strand, within GFF47 at 52.312 kb on - strand, within GFF47 at 52.312 kb on - strand, within GFF47 at 52.383 kb on + strand, within GFF47 at 52.383 kb on + strand, within GFF47 at 52.384 kb on - strand, within GFF47 at 52.384 kb on - strand, within GFF47 at 52.384 kb on - strand, within GFF47 at 52.556 kb on - strand, within GFF47 at 52.556 kb on - strand, within GFF47 at 52.928 kb on + strand at 52.928 kb on + strand at 52.928 kb on + strand at 52.929 kb on - strand at 52.929 kb on - strand at 53.375 kb on + strand, within GFF48 at 53.375 kb on + strand, within GFF48 at 53.375 kb on + strand, within GFF48 at 53.492 kb on + strand, within GFF48 at 53.493 kb on - strand, within GFF48 at 53.546 kb on + strand, within GFF48 at 53.547 kb on - strand, within GFF48 at 53.547 kb on - strand, within GFF48 at 53.705 kb on + strand, within GFF48 at 53.705 kb on + strand, within GFF48 at 53.705 kb on + strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 49,369 + -2.4 49,370 - +1.5 49,370 - +0.7 49,370 - -1.9 49,373 - -0.0 49,511 - +0.7 49,511 - -1.0 50,222 + GFF46 0.86 +2.0 50,222 + GFF46 0.86 -1.1 50,223 - GFF46 0.86 -0.5 50,356 - -0.5 50,445 + -0.9 50,445 + -2.8 50,445 + -1.3 50,445 + +0.2 50,445 + -2.8 50,551 - -0.1 50,709 + GFF47 0.13 -2.0 50,710 - GFF47 0.13 -1.0 52,311 + GFF47 0.74 -0.4 52,312 - GFF47 0.74 +0.3 52,312 - GFF47 0.74 -0.2 52,312 - GFF47 0.74 +1.6 52,383 + GFF47 0.77 -0.9 52,383 + GFF47 0.77 -1.3 52,384 - GFF47 0.77 -3.6 52,384 - GFF47 0.77 -2.2 52,384 - GFF47 0.77 +0.0 52,556 - GFF47 0.83 -0.6 52,556 - GFF47 0.83 -0.5 52,928 + -1.5 52,928 + -0.3 52,928 + +1.3 52,929 - +0.7 52,929 - -2.1 53,375 + GFF48 0.34 -1.5 53,375 + GFF48 0.34 +1.3 53,375 + GFF48 0.34 +0.1 53,492 + GFF48 0.45 -0.3 53,493 - GFF48 0.45 +2.8 53,546 + GFF48 0.49 -1.8 53,547 - GFF48 0.49 +0.1 53,547 - GFF48 0.49 +1.3 53,705 + GFF48 0.63 +0.2 53,705 + GFF48 0.63 +0.1 53,705 + GFF48 0.63 +0.4 53,706 - GFF48 0.63 -0.5 53,706 - GFF48 0.63 +0.6 53,706 - GFF48 0.63 -0.1 53,706 - GFF48 0.63 +0.3 53,706 - GFF48 0.63 +1.4 53,706 - GFF48 0.63 -1.7 53,706 - GFF48 0.63 -2.0 53,706 - GFF48 0.63 +1.7 53,706 - GFF48 0.63 +0.7 53,706 - GFF48 0.63 -0.3
Or see this region's nucleotide sequence