Strain Fitness in Variovorax sp. SCN45 around GFF4653

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
8,169	-		GFF4651	0.81	-2.3
8,410	+				+0.1
9,128	+		GFF4653	0.16	+4.7
9,129	-		GFF4653	0.16	+1.0
9,161	+		GFF4653	0.18	-1.3
9,161	+		GFF4653	0.18	-1.5
9,162	-		GFF4653	0.18	+2.5
9,162	-		GFF4653	0.18	+1.9
9,162	-		GFF4653	0.18	+0.8
9,264	-		GFF4653	0.26	+2.2
9,294	-		GFF4653	0.29	+1.4
9,530	+		GFF4653	0.47	-0.5
9,530	+		GFF4653	0.47	-2.3
9,531	-		GFF4653	0.47	+0.6
9,548	+		GFF4653	0.48	-3.5
9,548	+		GFF4653	0.48	-1.7
9,548	+		GFF4653	0.48	-3.8
9,548	+		GFF4653	0.48	+0.3
9,548	+		GFF4653	0.48	+0.9
9,549	-		GFF4653	0.48	-1.3
9,549	-		GFF4653	0.48	+0.3
9,663	-		GFF4653	0.57	-0.9
9,867	-		GFF4653	0.73	-0.5
9,867	-		GFF4653	0.73	+1.0
9,867	-		GFF4653	0.73	+1.9
10,085	+		GFF4653	0.90	-1.8
10,085	+		GFF4653	0.90	-0.5
10,085	+		GFF4653	0.90	-1.1
10,086	-		GFF4653	0.90	-2.2
10,086	-		GFF4653	0.90	+0.3
10,086	-		GFF4653	0.90	+2.9
10,100	+				+2.4
10,100	+				+0.9
10,101	-				-0.2
10,101	-				-0.6
10,101	-				+0.3
10,101	-				+0.2
10,101	-				+0.5
10,101	-				-1.3
10,350	+				-3.4
10,364	+				-1.3
10,364	+				-1.7
10,380	-				-0.1
10,380	-				+0.7
10,380	-				-2.3
10,461	+				-0.9
10,462	-				+2.0
10,462	-				+1.2
10,469	+				-0.9
10,469	+				+0.3
10,469	+				-2.3
10,469	+				-0.6
10,469	+				+1.3
10,469	+				-2.1
10,469	+				+1.4
10,469	+				+1.4
10,469	+				-0.4
10,469	+				-3.6
10,469	+				+1.4
10,470	-				-1.1
10,470	-				-3.2
10,470	-				+0.2
10,470	-				-0.4
10,470	-				-0.5
10,470	-				-2.5
10,470	-				+0.2
10,470	-				-2.5
10,470	-				-0.7
10,470	-				+0.1
10,470	-				-2.4
10,470	-				-0.4
10,489	+				+0.2
10,490	-				+1.2
10,520	+				-2.0
10,520	+				-0.9
10,520	+				+0.4
10,520	+				+1.2
10,521	-				-2.4
10,521	-				+0.1
10,521	-				-1.1
10,521	-				+0.8
10,521	-				+1.9
10,521	-				+0.3
10,521	-				-1.1
10,521	-				+0.5
10,521	-				-1.1
10,652	+				-1.1
10,653	-				-1.4
10,653	-				-3.2
10,653	-				+0.2
10,653	-				-2.1
10,754	+		GFF4654	0.13	-1.6
10,754	+		GFF4654	0.13	-2.5
10,754	+		GFF4654	0.13	+0.4
10,754	+		GFF4654	0.13	-2.0
10,754	+		GFF4654	0.13	-1.2
10,755	-		GFF4654	0.13	-1.5
10,755	-		GFF4654	0.13	+0.2
10,755	-		GFF4654	0.13	-3.0
10,755	-		GFF4654	0.13	+1.5
10,755	-		GFF4654	0.13	-2.7
10,802	+		GFF4654	0.15	-0.4
10,802	+		GFF4654	0.15	-0.7
11,168	+		GFF4654	0.31	-1.3
11,168	+		GFF4654	0.31	+0.3
11,169	-		GFF4654	0.31	-0.6
11,169	-		GFF4654	0.31	+0.3
11,169	-		GFF4654	0.31	-1.5
11,169	-		GFF4654	0.31	-0.9
11,198	+		GFF4654	0.33	-0.7
11,199	-		GFF4654	0.33	+0.9