Strain Fitness in Variovorax sp. SCN45 around GFF4645

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
102	+				-0.6
102	+				-0.7
102	+				+0.0
102	+				-1.0
103	-				-2.0
103	-				-1.3
103	-				+0.5
103	-				-1.1
103	-				-0.4
103	-				-0.1
103	-				-0.4
103	-				+2.2
103	-				-0.3
103	-				-2.0
103	-				-0.9
103	-				-1.2
103	-				+2.9
103	-				-1.5
238	-		GFF4644	0.56	-1.4
238	-		GFF4644	0.56	+1.2
238	-		GFF4644	0.56	+0.9
383	+				-0.5
384	-				-0.5
384	-				+0.9
384	-				-0.1
392	+				-0.3
428	+				+1.5
428	+				-1.3
429	-				-1.6
435	+				+0.1
435	+				-3.2
435	+				-1.9
436	-				-0.4
436	-				-2.5
436	-				-2.2
477	+				+0.3
477	+				-0.1
478	-				-2.8
478	-				-1.2
478	-				-1.1
478	-				-0.3
505	+				-0.3
505	+				+1.2
505	+				-0.2
506	-				+0.9
536	-				-1.1
600	+				+1.9
601	-				+2.2
757	+				-0.2
757	+				-1.5
757	+				+0.7
757	+				-0.1
867	+				+1.8
867	+				-0.0
867	+				-1.4
867	+				-2.6
868	-				-0.4
868	-				+0.1
868	-				-0.1
1,087	-		GFF4645	0.19	+1.5
1,176	+		GFF4645	0.24	+0.8
1,176	+		GFF4645	0.24	-2.5
1,176	+		GFF4645	0.24	-2.2
1,177	-		GFF4645	0.24	+0.4
1,177	-		GFF4645	0.24	-0.2
1,177	-		GFF4645	0.24	+1.8
1,201	-		GFF4645	0.26	-0.3
1,569	+		GFF4645	0.50	+0.6
1,569	+		GFF4645	0.50	-0.1
1,569	+		GFF4645	0.50	+0.3
1,570	-		GFF4645	0.50	+0.1
1,687	-		GFF4645	0.58	-2.3
1,692	+		GFF4645	0.58	-1.4
1,692	+		GFF4645	0.58	-1.2
1,938	+		GFF4645	0.75	-0.4
1,938	+		GFF4645	0.75	-0.5
1,939	-		GFF4645	0.75	+0.8
1,939	-		GFF4645	0.75	+0.2
2,169	+		GFF4645	0.90	-2.0
2,169	+		GFF4645	0.90	-0.3
2,169	+		GFF4645	0.90	+0.6
2,169	+		GFF4645	0.90	-3.7
2,170	-		GFF4645	0.90	+1.9
2,225	-				-2.5
2,225	-				+0.6
2,435	+				-0.4
2,435	+				-2.2
2,436	-				+0.3
2,436	-				+0.2
2,484	+				-2.5
2,484	+				+0.5
2,484	+				+0.3
2,485	-				+0.7
2,485	-				+0.9
2,504	+				+0.2
2,504	+				-0.3
2,531	-				+0.8
2,581	+				-1.1
2,581	+				-2.8
2,581	+				+0.3
2,581	+				+0.6
2,581	+				-0.8
2,581	+				-0.7
2,581	+				+0.0
2,581	+				-0.6
2,581	+				+0.6
2,581	+				+0.8
2,582	-				+0.4
2,582	-				-0.1
2,582	-				-0.9
2,582	-				-2.7
2,728	+		GFF4646	0.22	-0.0
2,729	-		GFF4646	0.22	-1.3
2,750	+		GFF4646	0.25	-2.7
2,750	+		GFF4646	0.25	-0.9
2,750	+		GFF4646	0.25	+2.3
2,750	+		GFF4646	0.25	+1.3
2,751	-		GFF4646	0.25	+1.9
2,830	+		GFF4646	0.33	+0.7
2,830	+		GFF4646	0.33	+1.3
2,830	+		GFF4646	0.33	-0.7
2,830	+		GFF4646	0.33	+0.4
2,830	+		GFF4646	0.33	-2.0
2,830	+		GFF4646	0.33	+0.7
2,830	+		GFF4646	0.33	+1.7
2,830	+		GFF4646	0.33	+0.3
2,830	+		GFF4646	0.33	-0.5
2,831	-		GFF4646	0.33	-0.6
2,831	-		GFF4646	0.33	+0.3
2,831	-		GFF4646	0.33	-0.1
2,831	-		GFF4646	0.33	+0.1
2,831	-		GFF4646	0.33	+1.4
2,831	-		GFF4646	0.33	-1.7
2,935	+		GFF4646	0.44	-1.5
2,936	-		GFF4646	0.44	-2.5
2,936	-		GFF4646	0.44	-0.3
2,936	-		GFF4646	0.44	-1.9
2,965	+		GFF4646	0.47	+2.3
3,064	+		GFF4646	0.57	-1.1
3,064	+		GFF4646	0.57	-0.5
3,064	+		GFF4646	0.57	-1.3
3,065	-		GFF4646	0.57	+1.1
3,178	+		GFF4646	0.68	-1.2
3,178	+		GFF4646	0.68	+0.3
3,179	-		GFF4646	0.69	-2.6