Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4641 and GFF4642 overlap by 4 nucleotides GFF4642 and GFF4643 are separated by 13 nucleotides
GFF4641 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 283,312 to 285,027
GFF4641
GFF4642 - no description, at 285,024 to 285,434
GFF4642
GFF4643 - no description, at 285,448 to 285,663
GFF4643
Position (kb) 285
286 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 284.048 kb on + strand, within GFF4641 at 284.048 kb on + strand, within GFF4641 at 284.048 kb on + strand, within GFF4641 at 284.048 kb on + strand, within GFF4641 at 284.048 kb on + strand, within GFF4641 at 284.048 kb on + strand, within GFF4641 at 284.048 kb on + strand, within GFF4641 at 284.048 kb on + strand, within GFF4641 at 284.048 kb on + strand, within GFF4641 at 284.048 kb on + strand, within GFF4641 at 284.048 kb on + strand, within GFF4641 at 284.048 kb on + strand, within GFF4641 at 284.048 kb on + strand, within GFF4641 at 284.048 kb on + strand, within GFF4641 at 284.048 kb on + strand, within GFF4641 at 284.049 kb on - strand, within GFF4641 at 284.049 kb on - strand, within GFF4641 at 284.049 kb on - strand, within GFF4641 at 284.049 kb on - strand, within GFF4641 at 284.049 kb on - strand, within GFF4641 at 284.049 kb on - strand, within GFF4641 at 284.049 kb on - strand, within GFF4641 at 284.049 kb on - strand, within GFF4641 at 284.049 kb on - strand, within GFF4641 at 284.049 kb on - strand, within GFF4641 at 284.049 kb on - strand, within GFF4641 at 284.049 kb on - strand, within GFF4641 at 284.049 kb on - strand, within GFF4641 at 284.057 kb on + strand, within GFF4641 at 284.057 kb on + strand, within GFF4641 at 284.057 kb on + strand, within GFF4641 at 284.057 kb on + strand, within GFF4641 at 284.057 kb on + strand, within GFF4641 at 284.057 kb on + strand, within GFF4641 at 284.057 kb on + strand, within GFF4641 at 284.057 kb on + strand, within GFF4641 at 284.057 kb on + strand, within GFF4641 at 284.058 kb on - strand, within GFF4641 at 284.058 kb on - strand, within GFF4641 at 284.058 kb on - strand, within GFF4641 at 284.058 kb on - strand, within GFF4641 at 284.058 kb on - strand, within GFF4641 at 284.058 kb on - strand, within GFF4641 at 284.058 kb on - strand, within GFF4641 at 284.058 kb on - strand, within GFF4641 at 284.072 kb on + strand, within GFF4641 at 284.081 kb on + strand, within GFF4641 at 284.081 kb on + strand, within GFF4641 at 284.082 kb on - strand, within GFF4641 at 284.082 kb on - strand, within GFF4641 at 284.119 kb on - strand, within GFF4641 at 284.338 kb on + strand, within GFF4641 at 284.338 kb on + strand, within GFF4641 at 284.338 kb on + strand, within GFF4641 at 284.339 kb on - strand, within GFF4641 at 284.339 kb on - strand, within GFF4641 at 284.339 kb on - strand, within GFF4641 at 284.339 kb on - strand, within GFF4641 at 284.339 kb on - strand, within GFF4641 at 284.339 kb on - strand, within GFF4641 at 284.473 kb on + strand, within GFF4641 at 284.473 kb on + strand, within GFF4641 at 284.474 kb on - strand, within GFF4641 at 284.474 kb on - strand, within GFF4641 at 284.474 kb on - strand, within GFF4641 at 284.474 kb on - strand, within GFF4641 at 284.474 kb on - strand, within GFF4641 at 284.603 kb on + strand, within GFF4641 at 284.603 kb on + strand, within GFF4641 at 284.603 kb on + strand, within GFF4641 at 284.603 kb on + strand, within GFF4641 at 284.603 kb on + strand, within GFF4641 at 284.604 kb on - strand, within GFF4641 at 284.604 kb on - strand, within GFF4641 at 284.604 kb on - strand, within GFF4641 at 284.604 kb on - strand, within GFF4641 at 284.633 kb on + strand, within GFF4641 at 284.633 kb on + strand, within GFF4641 at 284.784 kb on + strand, within GFF4641 at 284.784 kb on + strand, within GFF4641 at 284.785 kb on - strand, within GFF4641 at 284.811 kb on + strand, within GFF4641 at 284.811 kb on + strand, within GFF4641 at 284.812 kb on - strand, within GFF4641 at 284.812 kb on - strand, within GFF4641 at 284.812 kb on - strand, within GFF4641 at 284.812 kb on - strand, within GFF4641 at 284.834 kb on + strand, within GFF4641 at 284.834 kb on + strand, within GFF4641 at 284.834 kb on + strand, within GFF4641 at 284.834 kb on + strand, within GFF4641 at 284.834 kb on + strand, within GFF4641 at 284.835 kb on - strand, within GFF4641 at 284.835 kb on - strand, within GFF4641 at 284.835 kb on - strand, within GFF4641 at 284.873 kb on + strand at 284.873 kb on + strand at 284.873 kb on + strand at 284.873 kb on + strand at 284.873 kb on + strand at 284.873 kb on + strand at 284.873 kb on + strand at 284.873 kb on + strand at 284.874 kb on - strand at 284.874 kb on - strand at 284.874 kb on - strand at 284.874 kb on - strand at 284.874 kb on - strand at 284.874 kb on - strand at 284.874 kb on - strand at 284.876 kb on + strand at 284.876 kb on + strand at 284.877 kb on - strand at 284.889 kb on + strand at 284.908 kb on + strand at 284.909 kb on - strand at 284.909 kb on - strand at 284.924 kb on + strand at 284.925 kb on - strand at 284.925 kb on - strand at 284.947 kb on + strand at 284.947 kb on + strand at 284.947 kb on + strand at 284.956 kb on + strand at 284.957 kb on - strand at 284.957 kb on - strand at 284.957 kb on - strand at 284.957 kb on - strand at 285.119 kb on - strand, within GFF4642 at 285.119 kb on - strand, within GFF4642 at 285.119 kb on - strand, within GFF4642 at 285.119 kb on - strand, within GFF4642 at 285.119 kb on - strand, within GFF4642 at 285.131 kb on + strand, within GFF4642 at 285.132 kb on - strand, within GFF4642 at 285.132 kb on - strand, within GFF4642 at 285.202 kb on + strand, within GFF4642 at 285.202 kb on + strand, within GFF4642 at 285.202 kb on + strand, within GFF4642 at 285.203 kb on - strand, within GFF4642 at 285.203 kb on - strand, within GFF4642 at 285.203 kb on - strand, within GFF4642 at 285.271 kb on + strand, within GFF4642 at 285.271 kb on + strand, within GFF4642 at 285.271 kb on + strand, within GFF4642 at 285.271 kb on + strand, within GFF4642 at 285.271 kb on + strand, within GFF4642 at 285.271 kb on + strand, within GFF4642 at 285.271 kb on + strand, within GFF4642 at 285.271 kb on + strand, within GFF4642 at 285.271 kb on + strand, within GFF4642 at 285.271 kb on + strand, within GFF4642 at 285.271 kb on + strand, within GFF4642 at 285.271 kb on + strand, within GFF4642 at 285.271 kb on + strand, within GFF4642 at 285.271 kb on + strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.272 kb on - strand, within GFF4642 at 285.275 kb on + strand, within GFF4642 at 285.275 kb on + strand, within GFF4642 at 285.275 kb on + strand, within GFF4642 at 285.275 kb on + strand, within GFF4642 at 285.275 kb on + strand, within GFF4642 at 285.275 kb on + strand, within GFF4642 at 285.275 kb on + strand, within GFF4642 at 285.275 kb on + strand, within GFF4642 at 285.275 kb on + strand, within GFF4642 at 285.275 kb on + strand, within GFF4642 at 285.275 kb on + strand, within GFF4642 at 285.276 kb on - strand, within GFF4642 at 285.276 kb on - strand, within GFF4642 at 285.276 kb on - strand, within GFF4642 at 285.276 kb on - strand, within GFF4642 at 285.276 kb on - strand, within GFF4642 at 285.276 kb on - strand, within GFF4642 at 285.334 kb on - strand, within GFF4642 at 285.334 kb on - strand, within GFF4642 at 285.349 kb on + strand, within GFF4642 at 285.350 kb on - strand, within GFF4642 at 285.350 kb on - strand, within GFF4642 at 285.470 kb on + strand, within GFF4643 at 285.470 kb on + strand, within GFF4643 at 285.470 kb on + strand, within GFF4643 at 285.470 kb on + strand, within GFF4643 at 285.470 kb on + strand, within GFF4643 at 285.470 kb on + strand, within GFF4643 at 285.470 kb on + strand, within GFF4643 at 285.470 kb on + strand, within GFF4643 at 285.470 kb on + strand, within GFF4643 at 285.470 kb on + strand, within GFF4643 at 285.470 kb on + strand, within GFF4643 at 285.471 kb on - strand, within GFF4643 at 285.471 kb on - strand, within GFF4643 at 285.512 kb on + strand, within GFF4643 at 285.512 kb on + strand, within GFF4643 at 285.512 kb on + strand, within GFF4643 at 285.512 kb on + strand, within GFF4643 at 285.512 kb on + strand, within GFF4643 at 285.513 kb on - strand, within GFF4643 at 285.513 kb on - strand, within GFF4643 at 285.513 kb on - strand, within GFF4643 at 285.513 kb on - strand, within GFF4643 at 285.513 kb on - strand, within GFF4643 at 285.513 kb on - strand, within GFF4643 at 285.622 kb on + strand, within GFF4643 at 285.622 kb on + strand, within GFF4643 at 285.622 kb on + strand, within GFF4643 at 285.622 kb on + strand, within GFF4643 at 285.622 kb on + strand, within GFF4643 at 285.622 kb on + strand, within GFF4643 at 285.622 kb on + strand, within GFF4643 at 285.622 kb on + strand, within GFF4643 at 285.622 kb on + strand, within GFF4643 at 285.622 kb on + strand, within GFF4643 at 285.622 kb on + strand, within GFF4643 at 285.623 kb on - strand, within GFF4643 at 285.623 kb on - strand, within GFF4643 at 285.623 kb on - strand, within GFF4643 at 285.638 kb on + strand, within GFF4643 at 285.638 kb on + strand, within GFF4643 at 285.638 kb on + strand, within GFF4643 at 285.638 kb on + strand, within GFF4643 at 285.638 kb on + strand, within GFF4643 at 285.638 kb on + strand, within GFF4643 at 285.638 kb on + strand, within GFF4643 at 285.638 kb on + strand, within GFF4643 at 285.639 kb on - strand, within GFF4643 at 285.639 kb on - strand, within GFF4643 at 285.722 kb on - strand at 285.722 kb on - strand at 285.722 kb on - strand at 285.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 284,048 + GFF4641 0.43 -0.0 284,048 + GFF4641 0.43 +3.5 284,048 + GFF4641 0.43 -0.5 284,048 + GFF4641 0.43 -2.9 284,048 + GFF4641 0.43 -1.0 284,048 + GFF4641 0.43 +0.3 284,048 + GFF4641 0.43 -1.4 284,048 + GFF4641 0.43 -2.2 284,048 + GFF4641 0.43 -0.7 284,048 + GFF4641 0.43 -3.1 284,048 + GFF4641 0.43 -2.2 284,048 + GFF4641 0.43 -3.4 284,048 + GFF4641 0.43 -0.2 284,048 + GFF4641 0.43 -0.0 284,048 + GFF4641 0.43 -0.1 284,049 - GFF4641 0.43 +1.3 284,049 - GFF4641 0.43 -1.5 284,049 - GFF4641 0.43 +0.8 284,049 - GFF4641 0.43 -1.3 284,049 - GFF4641 0.43 -0.9 284,049 - GFF4641 0.43 +2.0 284,049 - GFF4641 0.43 +0.5 284,049 - GFF4641 0.43 +1.5 284,049 - GFF4641 0.43 -0.5 284,049 - GFF4641 0.43 +1.0 284,049 - GFF4641 0.43 -1.4 284,049 - GFF4641 0.43 -1.8 284,049 - GFF4641 0.43 -1.5 284,057 + GFF4641 0.43 -0.4 284,057 + GFF4641 0.43 +1.7 284,057 + GFF4641 0.43 +1.3 284,057 + GFF4641 0.43 -0.9 284,057 + GFF4641 0.43 +0.3 284,057 + GFF4641 0.43 -0.5 284,057 + GFF4641 0.43 +1.2 284,057 + GFF4641 0.43 -2.7 284,057 + GFF4641 0.43 +2.3 284,058 - GFF4641 0.43 -1.3 284,058 - GFF4641 0.43 -0.4 284,058 - GFF4641 0.43 -0.3 284,058 - GFF4641 0.43 +2.5 284,058 - GFF4641 0.43 -0.7 284,058 - GFF4641 0.43 +0.7 284,058 - GFF4641 0.43 +0.3 284,058 - GFF4641 0.43 -0.1 284,072 + GFF4641 0.44 -1.5 284,081 + GFF4641 0.45 +1.6 284,081 + GFF4641 0.45 -0.7 284,082 - GFF4641 0.45 -1.8 284,082 - GFF4641 0.45 +0.4 284,119 - GFF4641 0.47 +1.2 284,338 + GFF4641 0.60 -0.5 284,338 + GFF4641 0.60 +0.3 284,338 + GFF4641 0.60 +1.1 284,339 - GFF4641 0.60 -3.4 284,339 - GFF4641 0.60 -0.5 284,339 - GFF4641 0.60 -0.9 284,339 - GFF4641 0.60 -1.6 284,339 - GFF4641 0.60 +0.2 284,339 - GFF4641 0.60 +0.2 284,473 + GFF4641 0.68 -2.3 284,473 + GFF4641 0.68 -0.4 284,474 - GFF4641 0.68 -1.2 284,474 - GFF4641 0.68 +1.7 284,474 - GFF4641 0.68 -1.0 284,474 - GFF4641 0.68 -0.4 284,474 - GFF4641 0.68 -1.7 284,603 + GFF4641 0.75 -1.4 284,603 + GFF4641 0.75 +0.1 284,603 + GFF4641 0.75 +1.3 284,603 + GFF4641 0.75 +1.1 284,603 + GFF4641 0.75 -2.4 284,604 - GFF4641 0.75 +3.3 284,604 - GFF4641 0.75 +0.4 284,604 - GFF4641 0.75 -3.3 284,604 - GFF4641 0.75 +0.3 284,633 + GFF4641 0.77 -0.5 284,633 + GFF4641 0.77 -1.2 284,784 + GFF4641 0.86 +0.1 284,784 + GFF4641 0.86 -2.0 284,785 - GFF4641 0.86 -0.5 284,811 + GFF4641 0.87 -4.2 284,811 + GFF4641 0.87 +1.4 284,812 - GFF4641 0.87 +2.3 284,812 - GFF4641 0.87 +1.4 284,812 - GFF4641 0.87 -1.2 284,812 - GFF4641 0.87 +0.3 284,834 + GFF4641 0.89 -0.1 284,834 + GFF4641 0.89 +0.0 284,834 + GFF4641 0.89 +1.4 284,834 + GFF4641 0.89 +1.5 284,834 + GFF4641 0.89 -1.0 284,835 - GFF4641 0.89 +1.9 284,835 - GFF4641 0.89 +0.1 284,835 - GFF4641 0.89 +1.3 284,873 + -0.6 284,873 + -0.7 284,873 + -0.8 284,873 + -0.9 284,873 + -0.5 284,873 + -0.9 284,873 + -0.1 284,873 + -0.7 284,874 - -1.7 284,874 - -0.5 284,874 - -1.3 284,874 - -0.9 284,874 - +0.5 284,874 - +0.1 284,874 - -2.2 284,876 + -2.2 284,876 + -1.8 284,877 - +1.8 284,889 + -3.1 284,908 + +0.5 284,909 - -1.0 284,909 - -0.0 284,924 + -2.2 284,925 - -0.0 284,925 - -0.1 284,947 + +0.1 284,947 + -1.0 284,947 + +2.8 284,956 + +1.2 284,957 - -0.6 284,957 - +0.2 284,957 - -2.0 284,957 - -0.9 285,119 - GFF4642 0.23 -0.9 285,119 - GFF4642 0.23 -0.5 285,119 - GFF4642 0.23 -0.0 285,119 - GFF4642 0.23 -1.5 285,119 - GFF4642 0.23 -0.5 285,131 + GFF4642 0.26 -1.7 285,132 - GFF4642 0.26 -0.3 285,132 - GFF4642 0.26 +0.2 285,202 + GFF4642 0.43 +4.5 285,202 + GFF4642 0.43 +1.3 285,202 + GFF4642 0.43 -2.6 285,203 - GFF4642 0.44 -0.9 285,203 - GFF4642 0.44 -0.3 285,203 - GFF4642 0.44 -2.4 285,271 + GFF4642 0.60 -0.0 285,271 + GFF4642 0.60 +0.0 285,271 + GFF4642 0.60 -1.4 285,271 + GFF4642 0.60 -0.0 285,271 + GFF4642 0.60 -0.3 285,271 + GFF4642 0.60 +2.0 285,271 + GFF4642 0.60 +0.3 285,271 + GFF4642 0.60 -0.3 285,271 + GFF4642 0.60 -0.9 285,271 + GFF4642 0.60 -2.7 285,271 + GFF4642 0.60 -1.7 285,271 + GFF4642 0.60 -2.9 285,271 + GFF4642 0.60 -0.3 285,271 + GFF4642 0.60 -0.7 285,272 - GFF4642 0.60 -0.7 285,272 - GFF4642 0.60 -2.2 285,272 - GFF4642 0.60 -1.5 285,272 - GFF4642 0.60 -0.8 285,272 - GFF4642 0.60 +0.9 285,272 - GFF4642 0.60 -1.0 285,272 - GFF4642 0.60 +1.4 285,272 - GFF4642 0.60 +0.2 285,272 - GFF4642 0.60 +1.0 285,272 - GFF4642 0.60 +0.0 285,272 - GFF4642 0.60 -0.9 285,272 - GFF4642 0.60 -1.0 285,272 - GFF4642 0.60 +0.7 285,272 - GFF4642 0.60 -0.2 285,272 - GFF4642 0.60 +0.8 285,272 - GFF4642 0.60 +2.6 285,272 - GFF4642 0.60 -1.3 285,275 + GFF4642 0.61 -0.0 285,275 + GFF4642 0.61 -0.1 285,275 + GFF4642 0.61 -1.3 285,275 + GFF4642 0.61 -0.8 285,275 + GFF4642 0.61 +0.6 285,275 + GFF4642 0.61 -2.6 285,275 + GFF4642 0.61 -0.0 285,275 + GFF4642 0.61 +0.6 285,275 + GFF4642 0.61 -0.0 285,275 + GFF4642 0.61 -1.6 285,275 + GFF4642 0.61 -1.3 285,276 - GFF4642 0.61 +0.8 285,276 - GFF4642 0.61 -0.5 285,276 - GFF4642 0.61 +1.3 285,276 - GFF4642 0.61 +0.9 285,276 - GFF4642 0.61 -2.4 285,276 - GFF4642 0.61 +0.2 285,334 - GFF4642 0.75 -1.3 285,334 - GFF4642 0.75 -0.0 285,349 + GFF4642 0.79 -2.8 285,350 - GFF4642 0.79 -2.6 285,350 - GFF4642 0.79 -0.5 285,470 + GFF4643 0.10 +1.5 285,470 + GFF4643 0.10 -0.5 285,470 + GFF4643 0.10 -0.2 285,470 + GFF4643 0.10 -0.0 285,470 + GFF4643 0.10 +0.5 285,470 + GFF4643 0.10 -1.7 285,470 + GFF4643 0.10 -1.4 285,470 + GFF4643 0.10 -1.2 285,470 + GFF4643 0.10 -1.0 285,470 + GFF4643 0.10 -0.5 285,470 + GFF4643 0.10 -1.0 285,471 - GFF4643 0.11 -1.5 285,471 - GFF4643 0.11 -2.4 285,512 + GFF4643 0.30 -0.6 285,512 + GFF4643 0.30 -0.1 285,512 + GFF4643 0.30 -1.3 285,512 + GFF4643 0.30 -0.9 285,512 + GFF4643 0.30 -3.9 285,513 - GFF4643 0.30 -0.0 285,513 - GFF4643 0.30 -3.0 285,513 - GFF4643 0.30 -1.4 285,513 - GFF4643 0.30 -0.5 285,513 - GFF4643 0.30 -1.9 285,513 - GFF4643 0.30 +1.3 285,622 + GFF4643 0.81 +1.1 285,622 + GFF4643 0.81 -0.9 285,622 + GFF4643 0.81 +2.4 285,622 + GFF4643 0.81 +1.3 285,622 + GFF4643 0.81 -3.1 285,622 + GFF4643 0.81 -0.9 285,622 + GFF4643 0.81 -0.5 285,622 + GFF4643 0.81 -3.3 285,622 + GFF4643 0.81 -1.7 285,622 + GFF4643 0.81 -3.3 285,622 + GFF4643 0.81 -2.4 285,623 - GFF4643 0.81 -0.4 285,623 - GFF4643 0.81 +1.0 285,623 - GFF4643 0.81 +2.0 285,638 + GFF4643 0.88 -0.3 285,638 + GFF4643 0.88 +0.5 285,638 + GFF4643 0.88 -0.5 285,638 + GFF4643 0.88 -0.1 285,638 + GFF4643 0.88 -0.5 285,638 + GFF4643 0.88 -0.8 285,638 + GFF4643 0.88 -1.0 285,638 + GFF4643 0.88 -2.9 285,639 - GFF4643 0.88 -2.1 285,639 - GFF4643 0.88 +2.9 285,722 - -3.4 285,722 - +0.5 285,722 - +1.4 285,722 - -1.6
Or see this region's nucleotide sequence