Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4630 and GFF4631 are separated by 3 nucleotides GFF4631 and GFF4632 are separated by 3 nucleotides GFF4632 and GFF4633 overlap by 4 nucleotides GFF4633 and GFF4634 are separated by 1 nucleotides
GFF4630 - O-antigen export system permease protein RfbD, at 271,997 to 272,800
GFF4630
GFF4631 - ABC transporter, at 272,804 to 273,505
GFF4631
GFF4632 - Glycosyl transferase, family 2, at 273,509 to 274,456
GFF4632
GFF4633 - no description, at 274,453 to 274,818
GFF4633
GFF4634 - Transketolase, C-terminal section (EC 2.2.1.1), at 274,820 to 275,737
GFF4634
Position (kb) 273
274
275 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 273.598 kb on - strand at 273.598 kb on - strand at 273.598 kb on - strand at 273.714 kb on + strand, within GFF4632 at 273.715 kb on - strand, within GFF4632 at 273.715 kb on - strand, within GFF4632 at 273.822 kb on + strand, within GFF4632 at 273.823 kb on - strand, within GFF4632 at 273.823 kb on - strand, within GFF4632 at 273.831 kb on + strand, within GFF4632 at 273.831 kb on + strand, within GFF4632 at 273.831 kb on + strand, within GFF4632 at 273.831 kb on + strand, within GFF4632 at 273.831 kb on + strand, within GFF4632 at 273.831 kb on + strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.876 kb on + strand, within GFF4632 at 273.876 kb on + strand, within GFF4632 at 273.876 kb on + strand, within GFF4632 at 273.877 kb on - strand, within GFF4632 at 273.877 kb on - strand, within GFF4632 at 273.877 kb on - strand, within GFF4632 at 273.927 kb on + strand, within GFF4632 at 273.979 kb on - strand, within GFF4632 at 273.979 kb on - strand, within GFF4632 at 273.979 kb on - strand, within GFF4632 at 274.041 kb on + strand, within GFF4632 at 274.042 kb on - strand, within GFF4632 at 274.044 kb on + strand, within GFF4632 at 274.044 kb on + strand, within GFF4632 at 274.044 kb on + strand, within GFF4632 at 274.044 kb on + strand, within GFF4632 at 274.045 kb on - strand, within GFF4632 at 274.045 kb on - strand, within GFF4632 at 274.045 kb on - strand, within GFF4632 at 274.350 kb on + strand, within GFF4632 at 274.350 kb on + strand, within GFF4632 at 274.350 kb on + strand, within GFF4632 at 274.350 kb on + strand, within GFF4632 at 274.350 kb on + strand, within GFF4632 at 274.350 kb on + strand, within GFF4632 at 274.350 kb on + strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.426 kb on - strand at 274.426 kb on - strand at 274.426 kb on - strand at 274.426 kb on - strand at 274.426 kb on - strand at 274.426 kb on - strand at 274.426 kb on - strand at 274.535 kb on + strand, within GFF4633 at 274.535 kb on + strand, within GFF4633 at 274.536 kb on - strand, within GFF4633 at 274.536 kb on - strand, within GFF4633 at 274.563 kb on - strand, within GFF4633 at 274.601 kb on + strand, within GFF4633 at 274.601 kb on + strand, within GFF4633 at 274.601 kb on + strand, within GFF4633 at 274.602 kb on - strand, within GFF4633 at 274.602 kb on - strand, within GFF4633 at 274.602 kb on - strand, within GFF4633 at 274.735 kb on + strand, within GFF4633 at 274.757 kb on + strand, within GFF4633 at 274.908 kb on + strand at 274.908 kb on + strand at 274.909 kb on - strand at 274.909 kb on - strand at 275.280 kb on + strand, within GFF4634 at 275.280 kb on + strand, within GFF4634 at 275.281 kb on - strand, within GFF4634 at 275.281 kb on - strand, within GFF4634 at 275.281 kb on - strand, within GFF4634 at 275.359 kb on + strand, within GFF4634 at 275.360 kb on - strand, within GFF4634 at 275.360 kb on - strand, within GFF4634 at 275.361 kb on + strand, within GFF4634 at 275.361 kb on + strand, within GFF4634 at 275.362 kb on - strand, within GFF4634 at 275.362 kb on - strand, within GFF4634 at 275.362 kb on - strand, within GFF4634 at 275.386 kb on + strand, within GFF4634 at 275.425 kb on - strand, within GFF4634 at 275.425 kb on - strand, within GFF4634 at 275.425 kb on - strand, within GFF4634
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 273,598 - +0.1 273,598 - -0.0 273,598 - -1.0 273,714 + GFF4632 0.22 -1.2 273,715 - GFF4632 0.22 -0.9 273,715 - GFF4632 0.22 +0.8 273,822 + GFF4632 0.33 -1.0 273,823 - GFF4632 0.33 -1.1 273,823 - GFF4632 0.33 -3.0 273,831 + GFF4632 0.34 -0.0 273,831 + GFF4632 0.34 -0.4 273,831 + GFF4632 0.34 -0.7 273,831 + GFF4632 0.34 -1.5 273,831 + GFF4632 0.34 +1.6 273,831 + GFF4632 0.34 -1.3 273,832 - GFF4632 0.34 +1.0 273,832 - GFF4632 0.34 -1.8 273,832 - GFF4632 0.34 +0.1 273,832 - GFF4632 0.34 -3.4 273,832 - GFF4632 0.34 -2.6 273,832 - GFF4632 0.34 -2.7 273,832 - GFF4632 0.34 -4.3 273,832 - GFF4632 0.34 +0.3 273,832 - GFF4632 0.34 -1.2 273,832 - GFF4632 0.34 -2.3 273,876 + GFF4632 0.39 -3.1 273,876 + GFF4632 0.39 +0.3 273,876 + GFF4632 0.39 -1.6 273,877 - GFF4632 0.39 -1.8 273,877 - GFF4632 0.39 -0.0 273,877 - GFF4632 0.39 -2.0 273,927 + GFF4632 0.44 +0.7 273,979 - GFF4632 0.50 -2.3 273,979 - GFF4632 0.50 -2.4 273,979 - GFF4632 0.50 -0.7 274,041 + GFF4632 0.56 +1.1 274,042 - GFF4632 0.56 -4.8 274,044 + GFF4632 0.56 -1.2 274,044 + GFF4632 0.56 -1.5 274,044 + GFF4632 0.56 -0.3 274,044 + GFF4632 0.56 +1.1 274,045 - GFF4632 0.57 -1.2 274,045 - GFF4632 0.57 -0.9 274,045 - GFF4632 0.57 -1.2 274,350 + GFF4632 0.89 -0.6 274,350 + GFF4632 0.89 -0.1 274,350 + GFF4632 0.89 -3.9 274,350 + GFF4632 0.89 -1.6 274,350 + GFF4632 0.89 -1.8 274,350 + GFF4632 0.89 -1.2 274,350 + GFF4632 0.89 -1.0 274,351 - GFF4632 0.89 -3.5 274,351 - GFF4632 0.89 -0.1 274,351 - GFF4632 0.89 -0.7 274,351 - GFF4632 0.89 +1.6 274,351 - GFF4632 0.89 -1.6 274,351 - GFF4632 0.89 +0.0 274,351 - GFF4632 0.89 -1.4 274,351 - GFF4632 0.89 -1.9 274,426 - -0.5 274,426 - +0.8 274,426 - -1.0 274,426 - -2.5 274,426 - +1.3 274,426 - -3.1 274,426 - -0.2 274,535 + GFF4633 0.22 +1.4 274,535 + GFF4633 0.22 -1.7 274,536 - GFF4633 0.23 +1.1 274,536 - GFF4633 0.23 -2.2 274,563 - GFF4633 0.30 -0.1 274,601 + GFF4633 0.40 -0.6 274,601 + GFF4633 0.40 -0.3 274,601 + GFF4633 0.40 -1.9 274,602 - GFF4633 0.41 +3.3 274,602 - GFF4633 0.41 +0.3 274,602 - GFF4633 0.41 -0.4 274,735 + GFF4633 0.77 +1.7 274,757 + GFF4633 0.83 -1.9 274,908 + -1.8 274,908 + +0.6 274,909 - -1.5 274,909 - -1.6 275,280 + GFF4634 0.50 -0.0 275,280 + GFF4634 0.50 -1.1 275,281 - GFF4634 0.50 -2.5 275,281 - GFF4634 0.50 -2.1 275,281 - GFF4634 0.50 -1.2 275,359 + GFF4634 0.59 +1.2 275,360 - GFF4634 0.59 -1.6 275,360 - GFF4634 0.59 -2.1 275,361 + GFF4634 0.59 +2.3 275,361 + GFF4634 0.59 -2.0 275,362 - GFF4634 0.59 -3.8 275,362 - GFF4634 0.59 -0.4 275,362 - GFF4634 0.59 +2.3 275,386 + GFF4634 0.62 -3.9 275,425 - GFF4634 0.66 +0.7 275,425 - GFF4634 0.66 -0.5 275,425 - GFF4634 0.66 -1.6
Or see this region's nucleotide sequence