Strain Fitness in Variovorax sp. SCN45 around GFF4452

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
92,010	-		GFF4451	0.59	+2.0
92,120	+		GFF4451	0.65	-0.6
92,120	+		GFF4451	0.65	+1.6
92,120	+		GFF4451	0.65	-2.3
92,120	+		GFF4451	0.65	-0.9
92,120	+		GFF4451	0.65	-1.0
92,121	-		GFF4451	0.65	-0.7
92,121	-		GFF4451	0.65	+0.5
92,121	-		GFF4451	0.65	+1.0
92,249	+		GFF4451	0.72	-0.3
92,249	+		GFF4451	0.72	+0.1
92,249	+		GFF4451	0.72	-1.2
92,250	+		GFF4451	0.72	-0.6
92,250	-		GFF4451	0.72	-1.5
92,250	-		GFF4451	0.72	+0.3
92,250	-		GFF4451	0.72	+0.9
92,392	+		GFF4451	0.79	+2.2
92,392	+		GFF4451	0.79	-1.0
92,392	+		GFF4451	0.79	-1.0
92,392	+		GFF4451	0.79	-0.4
92,392	+		GFF4451	0.79	-3.0
92,392	+		GFF4451	0.79	-1.4
92,393	-		GFF4451	0.79	-1.5
92,393	-		GFF4451	0.79	-3.8
92,393	-		GFF4451	0.79	-1.6
92,393	-		GFF4451	0.79	-2.5
92,393	-		GFF4451	0.79	+2.3
92,393	-		GFF4451	0.79	-0.4
92,393	-		GFF4451	0.79	-1.4
92,393	-		GFF4451	0.79	-0.5
92,393	-		GFF4451	0.79	-1.9
92,396	+		GFF4451	0.80	-0.2
92,396	+		GFF4451	0.80	-0.0
92,396	+		GFF4451	0.80	-0.1
92,396	+		GFF4451	0.80	+0.1
92,396	+		GFF4451	0.80	-2.0
92,396	+		GFF4451	0.80	-2.9
92,396	+		GFF4451	0.80	+0.7
92,396	+		GFF4451	0.80	-3.0
92,396	+		GFF4451	0.80	+2.3
92,396	+		GFF4451	0.80	-1.4
92,396	+		GFF4451	0.80	-2.8
92,396	+		GFF4451	0.80	-1.7
92,396	+		GFF4451	0.80	+0.9
92,396	+		GFF4451	0.80	+1.3
92,397	-		GFF4451	0.80	-1.7
92,397	-		GFF4451	0.80	-0.8
92,397	-		GFF4451	0.80	-0.6
92,397	-		GFF4451	0.80	-1.3
92,397	-		GFF4451	0.80	+0.8
92,397	-		GFF4451	0.80	-0.0
92,397	-		GFF4451	0.80	+1.5
92,397	-		GFF4451	0.80	+0.7
92,397	-		GFF4451	0.80	+0.1
92,414	+		GFF4451	0.81	+0.5
92,415	-		GFF4451	0.81	-1.5
92,447	+		GFF4451	0.82	+1.7
92,447	+		GFF4451	0.82	-1.6
92,447	+		GFF4451	0.82	-0.7
92,447	+		GFF4451	0.82	-0.2
92,447	+		GFF4451	0.82	-1.2
92,448	-		GFF4451	0.82	+0.9
92,448	-		GFF4451	0.82	+0.5
92,448	-		GFF4451	0.82	+1.7
92,448	-		GFF4451	0.82	+0.4
92,448	-		GFF4451	0.82	-0.6
92,603	+				-0.3
92,603	+				-0.9
92,603	+				+1.7
92,604	-				-2.5
92,604	-				+0.5
92,604	-				-2.8
92,604	-				-1.5
92,925	-		GFF4452	0.19	-0.9
92,925	-		GFF4452	0.19	+0.0
92,925	-		GFF4452	0.19	-0.3
92,925	-		GFF4452	0.19	-0.5
93,074	+		GFF4452	0.39	-0.1
93,075	-		GFF4452	0.39	-2.0
93,075	-		GFF4452	0.39	-1.2
93,182	+		GFF4452	0.53	-0.5
93,182	+		GFF4452	0.53	+0.7
93,182	+		GFF4452	0.53	-0.9
93,183	-		GFF4452	0.53	-1.9
93,183	-		GFF4452	0.53	+1.3
93,183	-		GFF4452	0.53	+0.1
93,183	-		GFF4452	0.53	-0.0
93,183	-		GFF4452	0.53	+0.7
93,519	+				-1.7
93,520	-				+0.1
93,537	+				+1.7
93,538	-				-0.9
93,538	-				-2.4
93,538	-				-0.3
93,538	-				-0.3
93,538	-				-2.0
93,538	-				-0.0
93,573	-				+2.0
93,634	+				+0.7
93,686	+				+1.7
93,697	+				+1.0
93,697	+				-0.8
93,697	+				+0.7
93,697	+				-1.9
93,697	+				-1.0
93,698	-				+0.2
93,698	-				-1.4
93,698	-				+1.5
93,698	-				-1.8
93,732	+				-3.1
93,732	+				-0.6
93,732	+				-0.3
93,732	+				-2.1
93,733	-				-3.2
93,733	-				-0.0
93,733	-				-2.8
93,733	-				-0.1
93,733	-				-1.2
93,733	-				-1.6
93,737	+				+0.2
93,737	+				+2.3
93,738	-				-1.0
93,738	-				-1.1
93,849	+				-2.0
93,849	+				+1.4
93,850	-				-3.4
93,850	-				+0.7
93,933	+				-0.1
93,933	+				+2.5
93,933	+				+0.6
93,933	+				-2.4
93,934	-				+1.5
93,972	+		GFF4453	0.14	-0.1
93,972	+		GFF4453	0.14	-0.9
93,972	+		GFF4453	0.14	+2.3
93,972	+		GFF4453	0.14	-2.7
93,972	+		GFF4453	0.14	+1.1
93,972	+		GFF4453	0.14	-0.7
93,973	-		GFF4453	0.14	-2.3
93,973	-		GFF4453	0.14	-1.3
93,973	-		GFF4453	0.14	-1.7
93,973	-		GFF4453	0.14	-0.1
93,973	-		GFF4453	0.14	+0.7
93,973	-		GFF4453	0.14	-0.7
93,973	-		GFF4453	0.14	-2.9
94,176	+		GFF4453	0.45	-0.3
94,176	+		GFF4453	0.45	-1.3
94,176	+		GFF4453	0.45	+1.8
94,176	+		GFF4453	0.45	-2.7
94,176	+		GFF4453	0.45	+1.4
94,176	+		GFF4453	0.45	-1.9
94,176	+		GFF4453	0.45	+0.0
94,176	+		GFF4453	0.45	-0.7
94,177	-		GFF4453	0.45	-0.5
94,177	-		GFF4453	0.45	+0.6
94,177	-		GFF4453	0.45	+4.3
94,177	-		GFF4453	0.45	+0.9
94,177	-		GFF4453	0.45	-2.1
94,177	-		GFF4453	0.45	-2.0
94,177	-		GFF4453	0.45	-1.0
94,177	-		GFF4453	0.45	-0.5
94,177	-		GFF4453	0.45	-1.0
94,185	+		GFF4453	0.46	+2.5
94,185	+		GFF4453	0.46	-1.6
94,185	+		GFF4453	0.46	-1.6
94,185	+		GFF4453	0.46	+0.3
94,185	+		GFF4453	0.46	-0.5
94,185	+		GFF4453	0.46	-1.0
94,185	+		GFF4453	0.46	+1.1
94,185	+		GFF4453	0.46	-1.0
94,185	+		GFF4453	0.46	+0.2
94,185	+		GFF4453	0.46	+0.6
94,185	+		GFF4453	0.46	-0.8
94,185	+		GFF4453	0.46	-0.5
94,186	-		GFF4453	0.46	+1.8
94,186	-		GFF4453	0.46	-2.3
94,186	-		GFF4453	0.46	+0.7
94,186	-		GFF4453	0.46	-1.2
94,186	-		GFF4453	0.46	-0.9
94,186	-		GFF4453	0.46	+0.3
94,186	-		GFF4453	0.46	-0.4
94,186	-		GFF4453	0.46	+1.1
94,186	-		GFF4453	0.46	-1.9
94,186	-		GFF4453	0.46	-3.0
94,186	-		GFF4453	0.46	+1.9
94,260	+		GFF4453	0.57	-2.1
94,261	-		GFF4453	0.57	-0.5
94,261	-		GFF4453	0.57	+1.2
94,299	+		GFF4453	0.63	-2.0
94,300	-		GFF4453	0.63	-2.1
94,305	+		GFF4453	0.64	-3.4
94,306	-		GFF4453	0.64	+0.7
94,306	-		GFF4453	0.64	+0.4
94,320	+		GFF4453	0.66	-0.7
94,320	+		GFF4453	0.66	-3.1
94,320	+		GFF4453	0.66	-0.3
94,320	+		GFF4453	0.66	-0.4
94,320	+		GFF4453	0.66	-0.0
94,320	+		GFF4453	0.66	-2.5
94,320	+		GFF4453	0.66	-1.7
94,320	+		GFF4453	0.66	+1.5
94,320	+		GFF4453	0.66	-0.4
94,321	-		GFF4453	0.67	-2.5
94,321	-		GFF4453	0.67	-0.9
94,321	-		GFF4453	0.67	-1.8