Strain Fitness in Variovorax sp. SCN45 around GFF4347

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4346 and GFF4347 are separated by 42 nucleotidesGFF4347 and GFF4348 overlap by 1 nucleotides GFF4346 - no description, at 269,205 to 270,071 GFF4346 GFF4347 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 270,114 to 270,986 GFF4347 GFF4348 - hypothetical protein, at 270,986 to 272,101 GFF4348 Position (kb) 270 271Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 269.443 kb on + strand, within GFF4346at 269.512 kb on - strand, within GFF4346at 270.059 kb on + strandat 270.276 kb on + strand, within GFF4347at 270.531 kb on + strand, within GFF4347at 270.546 kb on - strand, within GFF4347at 270.751 kb on - strand, within GFF4347at 270.921 kb on + strandat 270.922 kb on - strandat 271.173 kb on - strand, within GFF4348at 271.712 kb on + strand, within GFF4348at 271.712 kb on + strand, within GFF4348at 271.784 kb on + strand, within GFF4348

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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269,443 + GFF4346 0.27 +2.5
269,512 - GFF4346 0.35 -2.9
270,059 + +1.0
270,276 + GFF4347 0.19 -1.6
270,531 + GFF4347 0.48 +0.3
270,546 - GFF4347 0.49 -1.9
270,751 - GFF4347 0.73 -0.6
270,921 + +0.6
270,922 - -1.5
271,173 - GFF4348 0.17 -0.7
271,712 + GFF4348 0.65 -2.0
271,712 + GFF4348 0.65 +3.0
271,784 + GFF4348 0.72 +1.9

Or see this region's nucleotide sequence