Strain Fitness in Variovorax sp. SCN45 around GFF4334
Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Community=Kojac gum; Passage=4 |
|---|---|---|---|---|---|
| remove | |||||
| 257,159 | + | GFF4333 | 0.57 | -2.7 | |
| 257,333 | + | GFF4333 | 0.76 | -1.1 | |
| 257,453 | + | GFF4333 | 0.89 | -1.1 | |
| 257,454 | - | GFF4333 | 0.89 | +0.4 | |
| 257,463 | - | -0.8 | |||
| 257,720 | + | GFF4334 | 0.17 | -1.9 | |
| 257,925 | - | GFF4334 | 0.43 | -0.5 | |
| 258,347 | + | +0.4 | |||
| 258,362 | + | -1.9 | |||
| 259,071 | - | GFF4335 | 0.58 | -0.0 | |
| 259,122 | - | GFF4335 | 0.63 | +0.2 |
Or see this region's nucleotide sequence