Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4260 and GFF4261 are separated by 160 nucleotides GFF4261 and GFF4262 overlap by 4 nucleotides
GFF4260 - hypothetical protein, at 175,017 to 179,039
GFF4260
GFF4261 - RNA polymerase ECF-type sigma factor, at 179,200 to 179,751
GFF4261
GFF4262 - hypothetical protein, at 179,748 to 180,893
GFF4262
Position (kb) 179
180 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 178.447 kb on - strand, within GFF4260 at 178.447 kb on - strand, within GFF4260 at 179.112 kb on + strand at 179.112 kb on + strand at 179.195 kb on - strand at 179.212 kb on + strand at 179.212 kb on + strand at 179.213 kb on - strand at 179.213 kb on - strand at 179.213 kb on - strand at 179.215 kb on + strand at 179.216 kb on - strand at 179.290 kb on + strand, within GFF4261 at 179.290 kb on + strand, within GFF4261 at 179.354 kb on - strand, within GFF4261 at 179.354 kb on - strand, within GFF4261 at 179.354 kb on - strand, within GFF4261 at 179.509 kb on + strand, within GFF4261 at 179.509 kb on + strand, within GFF4261 at 179.509 kb on + strand, within GFF4261 at 179.509 kb on + strand, within GFF4261 at 179.509 kb on + strand, within GFF4261 at 179.510 kb on - strand, within GFF4261 at 179.510 kb on - strand, within GFF4261 at 179.510 kb on - strand, within GFF4261 at 179.735 kb on + strand at 179.735 kb on + strand at 179.736 kb on - strand at 179.736 kb on - strand at 179.736 kb on - strand at 179.736 kb on - strand at 179.817 kb on + strand at 179.817 kb on + strand at 179.818 kb on - strand at 179.949 kb on + strand, within GFF4262 at 179.950 kb on - strand, within GFF4262 at 179.950 kb on - strand, within GFF4262 at 180.246 kb on + strand, within GFF4262 at 180.247 kb on - strand, within GFF4262 at 180.247 kb on - strand, within GFF4262 at 180.247 kb on - strand, within GFF4262 at 180.247 kb on - strand, within GFF4262 at 180.339 kb on + strand, within GFF4262 at 180.340 kb on - strand, within GFF4262
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 178,447 - GFF4260 0.85 +0.6 178,447 - GFF4260 0.85 -1.5 179,112 + +3.5 179,112 + +3.2 179,195 - -1.2 179,212 + -0.1 179,212 + -1.0 179,213 - +0.3 179,213 - -0.5 179,213 - +0.5 179,215 + -1.9 179,216 - +1.6 179,290 + GFF4261 0.16 -2.4 179,290 + GFF4261 0.16 +2.2 179,354 - GFF4261 0.28 +0.3 179,354 - GFF4261 0.28 -1.9 179,354 - GFF4261 0.28 +1.8 179,509 + GFF4261 0.56 -0.7 179,509 + GFF4261 0.56 +0.6 179,509 + GFF4261 0.56 -1.3 179,509 + GFF4261 0.56 -0.9 179,509 + GFF4261 0.56 -2.8 179,510 - GFF4261 0.56 +3.8 179,510 - GFF4261 0.56 +1.5 179,510 - GFF4261 0.56 -0.1 179,735 + -0.4 179,735 + -0.6 179,736 - -1.2 179,736 - -0.4 179,736 - -0.5 179,736 - -0.8 179,817 + -2.4 179,817 + +2.8 179,818 - +1.4 179,949 + GFF4262 0.18 +0.7 179,950 - GFF4262 0.18 -4.0 179,950 - GFF4262 0.18 -0.7 180,246 + GFF4262 0.43 -1.0 180,247 - GFF4262 0.44 -0.8 180,247 - GFF4262 0.44 -2.7 180,247 - GFF4262 0.44 -2.2 180,247 - GFF4262 0.44 -2.4 180,339 + GFF4262 0.52 +0.6 180,340 - GFF4262 0.52 -0.8
Or see this region's nucleotide sequence