Strain Fitness in Variovorax sp. SCN45 around GFF4240

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
150,163	+		GFF4239	0.18	+2.6
150,163	+		GFF4239	0.18	+0.3
150,163	+		GFF4239	0.18	+0.4
150,163	+		GFF4239	0.18	+1.5
150,163	+		GFF4239	0.18	-1.6
150,164	-		GFF4239	0.18	+0.2
150,164	-		GFF4239	0.18	-0.8
150,164	-		GFF4239	0.18	+1.0
150,164	-		GFF4239	0.18	-0.2
150,164	-		GFF4239	0.18	-1.9
150,430	+		GFF4239	0.45	+0.6
150,430	+		GFF4239	0.45	-2.4
150,430	+		GFF4239	0.45	-1.1
150,430	+		GFF4239	0.45	-0.8
150,431	-		GFF4239	0.45	-0.2
150,431	-		GFF4239	0.45	+0.6
150,431	-		GFF4239	0.45	-0.4
150,650	-		GFF4239	0.68	+0.2
150,650	-		GFF4239	0.68	+0.2
150,944	+				+1.2
150,944	+				-0.8
150,945	-				-0.1
150,955	+				+0.4
150,955	+				+1.9
150,955	+				-2.7
150,956	-				-3.5
150,980	+				+0.5
150,980	+				-2.7
150,980	+				-3.3
150,981	-				-2.0
150,981	-				+0.1
150,981	-				-1.6
151,372	-		GFF4240	0.13	+1.6
151,486	-		GFF4240	0.19	+2.2
151,530	+		GFF4240	0.22	-2.7
151,531	-		GFF4240	0.22	-4.0
151,675	-		GFF4240	0.30	+0.9
151,932	+		GFF4240	0.45	+0.7
151,932	+		GFF4240	0.45	-0.1
151,932	+		GFF4240	0.45	-2.2
151,932	+		GFF4240	0.45	-0.8
151,933	-		GFF4240	0.45	-0.5
151,933	-		GFF4240	0.45	+2.0
152,442	+		GFF4240	0.75	-0.9
152,443	-		GFF4240	0.75	+0.8
152,478	+		GFF4240	0.77	+1.8
152,479	-		GFF4240	0.77	-1.9
152,523	+		GFF4240	0.80	+0.2
152,524	-		GFF4240	0.80	-1.3
152,524	-		GFF4240	0.80	+1.8
152,524	-		GFF4240	0.80	-1.8
152,524	-		GFF4240	0.80	-0.8
152,602	+		GFF4240	0.84	-1.9
152,634	+		GFF4240	0.86	-1.2
152,634	+		GFF4240	0.86	-2.5
152,634	+		GFF4240	0.86	+0.3
152,635	-		GFF4240	0.86	-3.5
152,635	-		GFF4240	0.86	+0.5
152,635	-		GFF4240	0.86	+0.7
152,742	+				+1.2
152,743	-				-0.0
152,743	-				+1.6
152,808	+				-2.1
152,808	+				-0.1
152,909	+				+0.3
152,909	+				+1.9
152,909	+				+0.8
152,909	+				+1.1
152,910	-				-1.7
152,910	-				-2.6
152,910	-				-2.3
152,910	-				+2.1
152,910	-				-3.4
152,910	-				-0.2
152,910	-				+1.2
152,910	-				+0.6
152,943	-				-0.6
153,146	+				-3.2
153,146	+				+0.6
153,146	+				-1.5
153,146	+				+1.9
153,147	-				-1.7
153,147	-				+2.7
153,716	+		GFF4241	0.28	-0.0
153,717	-		GFF4241	0.28	+1.5
153,717	-		GFF4241	0.28	-0.1
153,719	+		GFF4241	0.28	-3.3
153,719	+		GFF4241	0.28	+0.2
153,719	+		GFF4241	0.28	-2.4
153,719	+		GFF4241	0.28	-0.6
153,719	+		GFF4241	0.28	-0.6
153,719	+		GFF4241	0.28	+0.4
153,719	+		GFF4241	0.28	+0.2
153,719	+		GFF4241	0.28	+0.6
153,719	+		GFF4241	0.28	-1.1
153,719	+		GFF4241	0.28	+2.4
153,720	-		GFF4241	0.28	-0.3
153,720	-		GFF4241	0.28	+1.8
153,720	-		GFF4241	0.28	-1.5
153,720	-		GFF4241	0.28	-0.6
153,720	-		GFF4241	0.28	-0.4
153,720	-		GFF4241	0.28	+2.0
153,831	-		GFF4241	0.32	+0.6