Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4212 and GFF4213 are separated by 53 nucleotides GFF4213 and GFF4214 are separated by 36 nucleotides GFF4214 and GFF4215 are separated by 2 nucleotides GFF4215 and GFF4216 are separated by 87 nucleotides
GFF4212 - Methionine gamma-lyase (EC 4.4.1.11), at 127,025 to 128,233
GFF4212
GFF4213 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 128,287 to 129,027
GFF4213
GFF4214 - L-amino acid ABC transporter (Glu/Asp/His/...), permease protein 2 AapM, at 129,064 to 130,173
GFF4214
GFF4215 - L-amino acid ABC transporter (Glu/Asp/His/...), permease protein 1 AapQ, at 130,176 to 130,856
GFF4215
GFF4216 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 130,944 to 131,288
GFF4216
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2 at 128.131 kb on - strand at 129.138 kb on - strand at 129.138 kb on - strand at 129.173 kb on + strand at 129.443 kb on + strand, within GFF4214 at 129.443 kb on + strand, within GFF4214 at 129.571 kb on + strand, within GFF4214 at 129.896 kb on + strand, within GFF4214 at 129.897 kb on - strand, within GFF4214 at 129.920 kb on + strand, within GFF4214 at 130.208 kb on - strand at 130.379 kb on - strand, within GFF4215 at 130.543 kb on + strand, within GFF4215 at 130.543 kb on + strand, within GFF4215 at 130.972 kb on + strand at 131.020 kb on - strand, within GFF4216
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 128,131 - -2.5 129,138 - -1.1 129,138 - +1.1 129,173 + +1.3 129,443 + GFF4214 0.34 -0.8 129,443 + GFF4214 0.34 +0.4 129,571 + GFF4214 0.46 -0.4 129,896 + GFF4214 0.75 -2.2 129,897 - GFF4214 0.75 -1.9 129,920 + GFF4214 0.77 +2.7 130,208 - +0.2 130,379 - GFF4215 0.30 -2.2 130,543 + GFF4215 0.54 +0.2 130,543 + GFF4215 0.54 -1.6 130,972 + +0.3 131,020 - GFF4216 0.22 -2.6
Or see this region's nucleotide sequence