Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4012 and GFF4013 are separated by 553 nucleotides GFF4013 and GFF4014 are separated by 353 nucleotides GFF4014 and GFF4015 are separated by 11 nucleotides
GFF4012 - hypothetical protein, at 220,831 to 223,500
GFF4012
GFF4013 - hypothetical protein, at 224,054 to 224,677
GFF4013
GFF4014 - Transcriptional regulator, ArsR family, at 225,031 to 225,354
GFF4014
GFF4015 - KEGG: lactoylglutathione lyase , at 225,366 to 225,845
GFF4015
Position (kb) 224
225 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 223.098 kb on - strand, within GFF4012 at 223.229 kb on + strand, within GFF4012 at 223.229 kb on + strand, within GFF4012 at 223.229 kb on + strand, within GFF4012 at 223.229 kb on + strand, within GFF4012 at 223.229 kb on + strand, within GFF4012 at 223.229 kb on + strand, within GFF4012 at 223.229 kb on + strand, within GFF4012 at 223.229 kb on + strand, within GFF4012 at 223.229 kb on + strand, within GFF4012 at 223.230 kb on - strand, within GFF4012 at 223.230 kb on - strand, within GFF4012 at 223.230 kb on - strand, within GFF4012 at 223.230 kb on - strand, within GFF4012 at 223.230 kb on - strand, within GFF4012 at 223.230 kb on - strand, within GFF4012 at 223.230 kb on - strand, within GFF4012 at 223.230 kb on - strand, within GFF4012 at 223.283 kb on + strand at 223.283 kb on + strand at 223.283 kb on + strand at 223.283 kb on + strand at 223.373 kb on + strand at 223.373 kb on + strand at 223.373 kb on + strand at 223.373 kb on + strand at 223.373 kb on + strand at 223.373 kb on + strand at 223.374 kb on - strand at 223.374 kb on - strand at 223.374 kb on - strand at 223.374 kb on - strand at 223.374 kb on - strand at 223.374 kb on - strand at 223.374 kb on - strand at 223.374 kb on - strand at 223.454 kb on - strand at 223.461 kb on + strand at 223.461 kb on + strand at 223.462 kb on - strand at 223.462 kb on - strand at 223.559 kb on - strand at 223.580 kb on + strand at 223.580 kb on + strand at 223.581 kb on - strand at 223.615 kb on - strand at 223.667 kb on + strand at 223.668 kb on - strand at 223.668 kb on - strand at 223.668 kb on - strand at 223.668 kb on - strand at 223.668 kb on - strand at 223.772 kb on + strand at 223.772 kb on + strand at 223.772 kb on + strand at 223.773 kb on - strand at 223.773 kb on - strand at 223.773 kb on - strand at 223.783 kb on + strand at 223.783 kb on + strand at 223.783 kb on + strand at 223.783 kb on + strand at 223.783 kb on + strand at 223.783 kb on + strand at 223.783 kb on + strand at 223.783 kb on + strand at 223.784 kb on - strand at 223.784 kb on - strand at 223.784 kb on - strand at 223.784 kb on - strand at 223.786 kb on + strand at 223.786 kb on + strand at 223.786 kb on + strand at 223.787 kb on - strand at 223.787 kb on - strand at 223.787 kb on - strand at 223.787 kb on - strand at 223.787 kb on - strand at 223.796 kb on + strand at 223.907 kb on + strand at 223.907 kb on + strand at 223.908 kb on - strand at 223.908 kb on - strand at 223.908 kb on - strand at 223.938 kb on + strand at 223.958 kb on + strand at 223.958 kb on + strand at 223.959 kb on - strand at 223.959 kb on - strand at 223.959 kb on - strand at 223.959 kb on - strand at 223.959 kb on - strand at 223.959 kb on - strand at 223.959 kb on - strand at 223.971 kb on + strand at 223.972 kb on - strand at 223.979 kb on + strand at 223.987 kb on - strand at 223.987 kb on - strand at 223.987 kb on - strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.048 kb on - strand at 224.048 kb on - strand at 224.048 kb on - strand at 224.048 kb on - strand at 224.048 kb on - strand at 224.048 kb on - strand at 224.048 kb on - strand at 224.048 kb on - strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.177 kb on + strand, within GFF4013 at 224.177 kb on + strand, within GFF4013 at 224.177 kb on + strand, within GFF4013 at 224.177 kb on + strand, within GFF4013 at 224.177 kb on + strand, within GFF4013 at 224.177 kb on + strand, within GFF4013 at 224.177 kb on + strand, within GFF4013 at 224.177 kb on + strand, within GFF4013 at 224.178 kb on - strand, within GFF4013 at 224.178 kb on - strand, within GFF4013 at 224.178 kb on - strand, within GFF4013 at 224.178 kb on - strand, within GFF4013 at 224.178 kb on - strand, within GFF4013 at 224.178 kb on - strand, within GFF4013 at 224.348 kb on - strand, within GFF4013 at 224.510 kb on + strand, within GFF4013 at 224.510 kb on + strand, within GFF4013 at 224.510 kb on + strand, within GFF4013 at 224.510 kb on + strand, within GFF4013 at 224.510 kb on + strand, within GFF4013 at 224.510 kb on + strand, within GFF4013 at 224.510 kb on + strand, within GFF4013 at 224.511 kb on - strand, within GFF4013 at 224.511 kb on - strand, within GFF4013 at 224.511 kb on - strand, within GFF4013 at 224.511 kb on - strand, within GFF4013 at 224.511 kb on - strand, within GFF4013 at 224.536 kb on + strand, within GFF4013 at 224.536 kb on + strand, within GFF4013 at 224.536 kb on + strand, within GFF4013 at 224.536 kb on + strand, within GFF4013 at 224.536 kb on + strand, within GFF4013 at 224.536 kb on + strand, within GFF4013 at 224.536 kb on + strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.679 kb on - strand at 224.685 kb on + strand at 224.748 kb on + strand at 224.748 kb on + strand at 224.748 kb on + strand at 224.748 kb on + strand at 224.748 kb on + strand at 224.749 kb on - strand at 224.765 kb on + strand at 224.765 kb on + strand at 224.766 kb on - strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.768 kb on - strand at 224.768 kb on - strand at 224.768 kb on - strand at 224.768 kb on - strand at 224.768 kb on - strand at 224.768 kb on - strand at 224.768 kb on - strand at 224.768 kb on - strand at 224.809 kb on + strand at 224.810 kb on - strand at 224.870 kb on + strand at 224.870 kb on + strand at 224.871 kb on - strand at 224.871 kb on - strand at 224.871 kb on - strand at 224.930 kb on + strand at 224.931 kb on - strand at 224.931 kb on - strand at 224.942 kb on + strand at 224.942 kb on + strand at 224.942 kb on + strand at 224.943 kb on - strand at 224.943 kb on - strand at 224.943 kb on - strand at 225.092 kb on + strand, within GFF4014 at 225.092 kb on + strand, within GFF4014 at 225.092 kb on + strand, within GFF4014 at 225.092 kb on + strand, within GFF4014 at 225.093 kb on - strand, within GFF4014 at 225.093 kb on - strand, within GFF4014 at 225.169 kb on - strand, within GFF4014 at 225.169 kb on - strand, within GFF4014 at 225.169 kb on - strand, within GFF4014 at 225.247 kb on + strand, within GFF4014 at 225.247 kb on + strand, within GFF4014 at 225.248 kb on - strand, within GFF4014 at 225.287 kb on - strand, within GFF4014 at 225.287 kb on - strand, within GFF4014 at 225.424 kb on - strand, within GFF4015 at 225.424 kb on - strand, within GFF4015 at 225.468 kb on + strand, within GFF4015 at 225.468 kb on + strand, within GFF4015 at 225.468 kb on + strand, within GFF4015 at 225.469 kb on - strand, within GFF4015
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 223,098 - GFF4012 0.85 -0.1 223,229 + GFF4012 0.90 -0.1 223,229 + GFF4012 0.90 -0.8 223,229 + GFF4012 0.90 +2.4 223,229 + GFF4012 0.90 +0.7 223,229 + GFF4012 0.90 -0.2 223,229 + GFF4012 0.90 +0.2 223,229 + GFF4012 0.90 -1.4 223,229 + GFF4012 0.90 -1.8 223,229 + GFF4012 0.90 +0.9 223,230 - GFF4012 0.90 -2.9 223,230 - GFF4012 0.90 +0.4 223,230 - GFF4012 0.90 -1.1 223,230 - GFF4012 0.90 -3.0 223,230 - GFF4012 0.90 +0.3 223,230 - GFF4012 0.90 -0.8 223,230 - GFF4012 0.90 -0.6 223,230 - GFF4012 0.90 +0.4 223,283 + -1.6 223,283 + -2.5 223,283 + +1.5 223,283 + +0.2 223,373 + +1.2 223,373 + -0.8 223,373 + +0.2 223,373 + +0.6 223,373 + -0.4 223,373 + -2.3 223,374 - -2.0 223,374 - +0.6 223,374 - -1.9 223,374 - +0.6 223,374 - -0.6 223,374 - -1.1 223,374 - +0.6 223,374 - -1.0 223,454 - +0.5 223,461 + -1.0 223,461 + +0.1 223,462 - +0.7 223,462 - -1.3 223,559 - +0.2 223,580 + -2.3 223,580 + +0.5 223,581 - -1.1 223,615 - -1.1 223,667 + -1.8 223,668 - -1.1 223,668 - -1.1 223,668 - +2.7 223,668 - +0.6 223,668 - +1.1 223,772 + -3.3 223,772 + -0.1 223,772 + -1.5 223,773 - -0.6 223,773 - -2.4 223,773 - -0.8 223,783 + +0.7 223,783 + -0.3 223,783 + -2.3 223,783 + -1.0 223,783 + -1.5 223,783 + -0.5 223,783 + +0.6 223,783 + -1.3 223,784 - +1.6 223,784 - +0.4 223,784 - +2.2 223,784 - -0.1 223,786 + -1.6 223,786 + +1.2 223,786 + +0.5 223,787 - +0.5 223,787 - +1.8 223,787 - -3.8 223,787 - -1.6 223,787 - -1.1 223,796 + -2.0 223,907 + +0.9 223,907 + +0.2 223,908 - -1.9 223,908 - -0.8 223,908 - +0.7 223,938 + -3.1 223,958 + -2.1 223,958 + -1.0 223,959 - +1.3 223,959 - -2.9 223,959 - +1.8 223,959 - -0.1 223,959 - +0.1 223,959 - -1.0 223,959 - +1.3 223,971 + -0.8 223,972 - +1.8 223,979 + -0.3 223,987 - -0.6 223,987 - +0.3 223,987 - +0.1 224,047 + +2.0 224,047 + -1.3 224,047 + -0.7 224,047 + -1.1 224,047 + -0.9 224,047 + -1.8 224,047 + +1.2 224,047 + -1.6 224,047 + -0.7 224,048 - -1.1 224,048 - +2.2 224,048 - -0.1 224,048 - -1.4 224,048 - -2.3 224,048 - -0.8 224,048 - +1.7 224,048 - -0.1 224,053 + -0.9 224,053 + -0.1 224,053 + -2.5 224,053 + +0.6 224,053 + -1.0 224,053 + -0.1 224,053 + -2.7 224,053 + +1.4 224,053 + -0.1 224,053 + -0.8 224,053 + +0.4 224,053 + +0.5 224,054 - +1.6 224,054 - -1.7 224,054 - +1.0 224,054 - +2.4 224,054 - -1.4 224,054 - -0.4 224,054 - +0.2 224,054 - +0.6 224,054 - -0.4 224,054 - -0.8 224,177 + GFF4013 0.20 -1.3 224,177 + GFF4013 0.20 -1.3 224,177 + GFF4013 0.20 -0.1 224,177 + GFF4013 0.20 -0.9 224,177 + GFF4013 0.20 -0.5 224,177 + GFF4013 0.20 +1.2 224,177 + GFF4013 0.20 -0.8 224,177 + GFF4013 0.20 +0.7 224,178 - GFF4013 0.20 -1.8 224,178 - GFF4013 0.20 +2.6 224,178 - GFF4013 0.20 +1.6 224,178 - GFF4013 0.20 +1.6 224,178 - GFF4013 0.20 +0.7 224,178 - GFF4013 0.20 -2.1 224,348 - GFF4013 0.47 -1.3 224,510 + GFF4013 0.73 +1.0 224,510 + GFF4013 0.73 +2.2 224,510 + GFF4013 0.73 +0.9 224,510 + GFF4013 0.73 +0.5 224,510 + GFF4013 0.73 +1.8 224,510 + GFF4013 0.73 -0.4 224,510 + GFF4013 0.73 +1.5 224,511 - GFF4013 0.73 +1.0 224,511 - GFF4013 0.73 -2.2 224,511 - GFF4013 0.73 -0.4 224,511 - GFF4013 0.73 +0.6 224,511 - GFF4013 0.73 -1.1 224,536 + GFF4013 0.77 +1.8 224,536 + GFF4013 0.77 +0.8 224,536 + GFF4013 0.77 -1.4 224,536 + GFF4013 0.77 -1.9 224,536 + GFF4013 0.77 +1.7 224,536 + GFF4013 0.77 -1.1 224,536 + GFF4013 0.77 -0.2 224,537 - GFF4013 0.77 +1.5 224,537 - GFF4013 0.77 +0.7 224,537 - GFF4013 0.77 -1.2 224,537 - GFF4013 0.77 -1.4 224,537 - GFF4013 0.77 -0.6 224,537 - GFF4013 0.77 -1.2 224,537 - GFF4013 0.77 +0.2 224,537 - GFF4013 0.77 -0.4 224,537 - GFF4013 0.77 +0.0 224,679 - +0.7 224,685 + +0.8 224,748 + +3.2 224,748 + -1.1 224,748 + +0.6 224,748 + +0.9 224,748 + +0.1 224,749 - -1.9 224,765 + +1.4 224,765 + +0.3 224,766 - +1.8 224,767 + -0.9 224,767 + +0.2 224,767 + +0.6 224,767 + -0.8 224,767 + -1.1 224,767 + -1.4 224,767 + -2.7 224,767 + +1.2 224,767 + -0.4 224,767 + -1.8 224,767 + +0.3 224,767 + +0.8 224,767 + -0.1 224,767 + +1.2 224,768 - -0.6 224,768 - -0.4 224,768 - -1.8 224,768 - -0.1 224,768 - -2.0 224,768 - -2.3 224,768 - +0.6 224,768 - -0.6 224,809 + +1.1 224,810 - -0.3 224,870 + +0.7 224,870 + +1.4 224,871 - +0.0 224,871 - +1.4 224,871 - +0.6 224,930 + +2.5 224,931 - +0.4 224,931 - -0.1 224,942 + +0.9 224,942 + +2.2 224,942 + +0.4 224,943 - -0.0 224,943 - -2.4 224,943 - -1.5 225,092 + GFF4014 0.19 +2.3 225,092 + GFF4014 0.19 +1.1 225,092 + GFF4014 0.19 +2.3 225,092 + GFF4014 0.19 -0.5 225,093 - GFF4014 0.19 -0.1 225,093 - GFF4014 0.19 -1.4 225,169 - GFF4014 0.43 -3.3 225,169 - GFF4014 0.43 +1.9 225,169 - GFF4014 0.43 +2.2 225,247 + GFF4014 0.67 -2.0 225,247 + GFF4014 0.67 -1.9 225,248 - GFF4014 0.67 +1.9 225,287 - GFF4014 0.79 +2.4 225,287 - GFF4014 0.79 +0.4 225,424 - GFF4015 0.12 -0.5 225,424 - GFF4015 0.12 +0.5 225,468 + GFF4015 0.21 -3.6 225,468 + GFF4015 0.21 +2.7 225,468 + GFF4015 0.21 -0.3 225,469 - GFF4015 0.21 +2.9
Or see this region's nucleotide sequence