Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3833 and GFF3834 are separated by 168 nucleotides GFF3834 and GFF3835 overlap by 4 nucleotides GFF3835 and GFF3836 are separated by 64 nucleotides
GFF3833 - FIG01056426: hypothetical protein, at 23,586 to 24,842
GFF3833
GFF3834 - hypothetical protein, at 25,011 to 25,556
GFF3834
GFF3835 - ADP-ribosylglycohydrolase family protein, at 25,553 to 25,954
GFF3835
GFF3836 - Cyclic beta-1,2-glucan synthase (EC 2.4.1.-), at 26,019 to 34,184
GFF3836
Position (kb) 25
26 Strain fitness (log2 ratio) -2
-1
0
1
2 at 24.019 kb on + strand, within GFF3833 at 24.020 kb on - strand, within GFF3833 at 24.020 kb on - strand, within GFF3833 at 24.020 kb on - strand, within GFF3833 at 24.020 kb on - strand, within GFF3833 at 24.088 kb on + strand, within GFF3833 at 24.089 kb on - strand, within GFF3833 at 24.089 kb on - strand, within GFF3833 at 24.089 kb on - strand, within GFF3833 at 24.089 kb on - strand, within GFF3833 at 24.094 kb on + strand, within GFF3833 at 24.094 kb on + strand, within GFF3833 at 24.094 kb on + strand, within GFF3833 at 24.094 kb on + strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.358 kb on + strand, within GFF3833 at 24.359 kb on - strand, within GFF3833 at 24.359 kb on - strand, within GFF3833 at 24.716 kb on + strand, within GFF3833 at 24.947 kb on + strand at 24.947 kb on + strand at 24.948 kb on - strand at 24.948 kb on - strand at 25.012 kb on + strand at 25.013 kb on - strand at 25.018 kb on + strand at 25.018 kb on + strand at 25.018 kb on + strand at 25.019 kb on - strand at 25.019 kb on - strand at 25.019 kb on - strand at 25.019 kb on - strand at 25.380 kb on - strand, within GFF3834 at 25.468 kb on + strand, within GFF3834 at 25.688 kb on + strand, within GFF3835 at 25.688 kb on + strand, within GFF3835 at 25.689 kb on - strand, within GFF3835 at 25.689 kb on - strand, within GFF3835 at 25.689 kb on - strand, within GFF3835 at 26.001 kb on - strand at 26.281 kb on + strand at 26.281 kb on + strand at 26.308 kb on + strand at 26.308 kb on + strand at 26.308 kb on - strand at 26.309 kb on - strand at 26.309 kb on - strand at 26.309 kb on - strand at 26.323 kb on + strand at 26.323 kb on + strand at 26.323 kb on + strand at 26.324 kb on - strand at 26.324 kb on - strand at 26.345 kb on - strand at 26.485 kb on + strand at 26.486 kb on - strand at 26.486 kb on - strand at 26.530 kb on + strand at 26.531 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 24,019 + GFF3833 0.34 +0.6 24,020 - GFF3833 0.35 -0.0 24,020 - GFF3833 0.35 -0.3 24,020 - GFF3833 0.35 +0.4 24,020 - GFF3833 0.35 +0.6 24,088 + GFF3833 0.40 +1.2 24,089 - GFF3833 0.40 -2.0 24,089 - GFF3833 0.40 +1.4 24,089 - GFF3833 0.40 +0.7 24,089 - GFF3833 0.40 -2.4 24,094 + GFF3833 0.40 -1.2 24,094 + GFF3833 0.40 +0.7 24,094 + GFF3833 0.40 -0.6 24,094 + GFF3833 0.40 -0.1 24,095 - GFF3833 0.40 -0.1 24,095 - GFF3833 0.40 -1.7 24,095 - GFF3833 0.40 -1.1 24,095 - GFF3833 0.40 -1.6 24,095 - GFF3833 0.40 +0.5 24,095 - GFF3833 0.40 -0.4 24,358 + GFF3833 0.61 -2.7 24,359 - GFF3833 0.61 +2.5 24,359 - GFF3833 0.61 +0.9 24,716 + GFF3833 0.90 +1.7 24,947 + +1.6 24,947 + +0.2 24,948 - -0.1 24,948 - -0.6 25,012 + +1.2 25,013 - +2.6 25,018 + -1.1 25,018 + +1.1 25,018 + -1.9 25,019 - +0.2 25,019 - +0.5 25,019 - +0.2 25,019 - -1.5 25,380 - GFF3834 0.68 +0.1 25,468 + GFF3834 0.84 -0.8 25,688 + GFF3835 0.34 -0.7 25,688 + GFF3835 0.34 +0.8 25,689 - GFF3835 0.34 -0.4 25,689 - GFF3835 0.34 -0.4 25,689 - GFF3835 0.34 -2.1 26,001 - -0.4 26,281 + -1.1 26,281 + -2.4 26,308 + -2.0 26,308 + -1.1 26,308 - +1.2 26,309 - -1.9 26,309 - -1.1 26,309 - -1.8 26,323 + +0.5 26,323 + -1.1 26,323 + -1.1 26,324 - -0.8 26,324 - -1.4 26,345 - -0.4 26,485 + -2.0 26,486 - -1.0 26,486 - -1.8 26,530 + +0.3 26,531 - -0.8
Or see this region's nucleotide sequence