Strain Fitness in Variovorax sp. SCN45 around GFF3753

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3751 and GFF3752 are separated by 65 nucleotidesGFF3752 and GFF3753 overlap by 4 nucleotidesGFF3753 and GFF3754 are separated by 71 nucleotides GFF3751 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 245,442 to 246,209 GFF3751 GFF3752 - KEGG: catechol 2,3-dioxygenase , at 246,275 to 246,826 GFF3752 GFF3753 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 246,823 to 247,842 GFF3753 GFF3754 - Fumarylacetoacetate hydrolase family protein, at 247,914 to 248,852 GFF3754 Position (kb) 246 247 248Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 245.914 kb on + strand, within GFF3751at 246.091 kb on + strand, within GFF3751at 246.091 kb on + strand, within GFF3751at 246.091 kb on + strand, within GFF3751at 246.091 kb on + strand, within GFF3751at 246.092 kb on - strand, within GFF3751at 246.092 kb on - strand, within GFF3751at 246.092 kb on - strand, within GFF3751at 246.132 kb on + strand, within GFF3751at 246.133 kb on - strandat 246.133 kb on - strandat 246.372 kb on + strand, within GFF3752at 246.372 kb on + strand, within GFF3752at 246.372 kb on + strand, within GFF3752at 246.409 kb on - strand, within GFF3752at 246.409 kb on - strand, within GFF3752at 246.409 kb on - strand, within GFF3752at 246.409 kb on - strand, within GFF3752at 246.420 kb on + strand, within GFF3752at 246.420 kb on + strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.516 kb on + strand, within GFF3752at 246.558 kb on + strand, within GFF3752at 246.558 kb on + strand, within GFF3752at 246.594 kb on + strand, within GFF3752at 246.594 kb on + strand, within GFF3752at 246.594 kb on + strand, within GFF3752at 246.595 kb on - strand, within GFF3752at 246.595 kb on - strand, within GFF3752at 246.595 kb on - strand, within GFF3752at 246.595 kb on - strand, within GFF3752at 246.726 kb on + strand, within GFF3752at 246.726 kb on + strand, within GFF3752at 246.727 kb on - strand, within GFF3752at 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.935 kb on + strand, within GFF3753at 246.935 kb on + strand, within GFF3753at 246.935 kb on + strand, within GFF3753at 246.935 kb on + strand, within GFF3753at 246.936 kb on - strand, within GFF3753at 247.076 kb on + strand, within GFF3753at 247.077 kb on - strand, within GFF3753at 247.083 kb on - strand, within GFF3753at 247.169 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.568 kb on + strand, within GFF3753at 247.568 kb on + strand, within GFF3753at 247.569 kb on - strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.854 kb on - strandat 247.854 kb on - strandat 247.854 kb on - strandat 247.854 kb on - strandat 247.854 kb on - strandat 247.854 kb on - strandat 247.854 kb on - strandat 247.854 kb on - strandat 247.996 kb on + strandat 247.996 kb on + strandat 247.997 kb on - strandat 247.997 kb on - strandat 248.080 kb on + strand, within GFF3754at 248.080 kb on + strand, within GFF3754at 248.081 kb on - strand, within GFF3754at 248.081 kb on - strand, within GFF3754at 248.081 kb on - strand, within GFF3754at 248.081 kb on - strand, within GFF3754at 248.270 kb on - strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.578 kb on + strand, within GFF3754at 248.578 kb on + strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.776 kb on + strandat 248.776 kb on + strandat 248.776 kb on + strandat 248.776 kb on + strandat 248.777 kb on - strandat 248.777 kb on - strandat 248.777 kb on - strandat 248.777 kb on - strandat 248.827 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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245,914 + GFF3751 0.61 -1.8
246,091 + GFF3751 0.85 +0.3
246,091 + GFF3751 0.85 -0.3
246,091 + GFF3751 0.85 -0.1
246,091 + GFF3751 0.85 +0.6
246,092 - GFF3751 0.85 -0.1
246,092 - GFF3751 0.85 -2.8
246,092 - GFF3751 0.85 -1.3
246,132 + GFF3751 0.90 -0.8
246,133 - -1.5
246,133 - +1.5
246,372 + GFF3752 0.18 +0.9
246,372 + GFF3752 0.18 -2.8
246,372 + GFF3752 0.18 +1.8
246,409 - GFF3752 0.24 +1.1
246,409 - GFF3752 0.24 -1.0
246,409 - GFF3752 0.24 -0.4
246,409 - GFF3752 0.24 +0.1
246,420 + GFF3752 0.26 -1.3
246,420 + GFF3752 0.26 -1.7
246,421 - GFF3752 0.26 +0.2
246,421 - GFF3752 0.26 -2.2
246,421 - GFF3752 0.26 +1.9
246,421 - GFF3752 0.26 +0.8
246,421 - GFF3752 0.26 +0.9
246,421 - GFF3752 0.26 -2.7
246,421 - GFF3752 0.26 +0.8
246,421 - GFF3752 0.26 -1.4
246,516 + GFF3752 0.44 -1.2
246,558 + GFF3752 0.51 -0.7
246,558 + GFF3752 0.51 -0.9
246,594 + GFF3752 0.58 +2.2
246,594 + GFF3752 0.58 +0.3
246,594 + GFF3752 0.58 +1.2
246,595 - GFF3752 0.58 -1.2
246,595 - GFF3752 0.58 -1.4
246,595 - GFF3752 0.58 +1.4
246,595 - GFF3752 0.58 -1.9
246,726 + GFF3752 0.82 +1.0
246,726 + GFF3752 0.82 -1.5
246,727 - GFF3752 0.82 -2.0
246,848 + -1.1
246,848 + -0.6
246,848 + +1.4
246,848 + +0.6
246,848 + -0.4
246,848 + +0.9
246,848 + -0.6
246,848 + -0.9
246,848 + -2.0
246,848 + -1.3
246,848 + +0.4
246,848 + -1.3
246,848 + -0.5
246,848 + -0.2
246,848 + -0.6
246,848 + +0.9
246,849 - -0.8
246,849 - -1.5
246,849 - -0.8
246,849 - -1.9
246,849 - -0.6
246,849 - -3.4
246,849 - -0.4
246,849 - +0.2
246,849 - -2.6
246,849 - +1.0
246,935 + GFF3753 0.11 -0.6
246,935 + GFF3753 0.11 -2.8
246,935 + GFF3753 0.11 -1.6
246,935 + GFF3753 0.11 +1.7
246,936 - GFF3753 0.11 -1.7
247,076 + GFF3753 0.25 -1.8
247,077 - GFF3753 0.25 +1.2
247,083 - GFF3753 0.25 -2.2
247,169 + GFF3753 0.34 -0.5
247,193 + GFF3753 0.36 +0.5
247,193 + GFF3753 0.36 -1.2
247,193 + GFF3753 0.36 -1.6
247,193 + GFF3753 0.36 -0.9
247,193 + GFF3753 0.36 +1.1
247,568 + GFF3753 0.73 +0.6
247,568 + GFF3753 0.73 +1.7
247,569 - GFF3753 0.73 +0.1
247,727 + GFF3753 0.89 +0.0
247,727 + GFF3753 0.89 +2.7
247,727 + GFF3753 0.89 -0.9
247,727 + GFF3753 0.89 +0.2
247,727 + GFF3753 0.89 -0.4
247,727 + GFF3753 0.89 +0.4
247,727 + GFF3753 0.89 -4.8
247,727 + GFF3753 0.89 -2.0
247,727 + GFF3753 0.89 -0.6
247,727 + GFF3753 0.89 -0.3
247,727 + GFF3753 0.89 -0.1
247,727 + GFF3753 0.89 +0.6
247,728 - GFF3753 0.89 -1.0
247,728 - GFF3753 0.89 +0.4
247,728 - GFF3753 0.89 +1.0
247,728 - GFF3753 0.89 -1.6
247,728 - GFF3753 0.89 +1.6
247,728 - GFF3753 0.89 +2.4
247,728 - GFF3753 0.89 +0.1
247,728 - GFF3753 0.89 +1.4
247,728 - GFF3753 0.89 -2.8
247,728 - GFF3753 0.89 +1.3
247,728 - GFF3753 0.89 -3.9
247,728 - GFF3753 0.89 +1.9
247,728 - GFF3753 0.89 +2.4
247,728 - GFF3753 0.89 -1.4
247,728 - GFF3753 0.89 +3.3
247,728 - GFF3753 0.89 +0.4
247,728 - GFF3753 0.89 -0.4
247,728 - GFF3753 0.89 +1.3
247,853 + +0.4
247,853 + +0.9
247,853 + +0.4
247,853 + -1.3
247,853 + +0.1
247,853 + -0.4
247,853 + -0.2
247,853 + -2.7
247,853 + -0.4
247,853 + -1.4
247,853 + -0.2
247,853 + -2.2
247,853 + -2.4
247,854 - -0.4
247,854 - -3.3
247,854 - -0.2
247,854 - +0.2
247,854 - -2.6
247,854 - +1.0
247,854 - -1.7
247,854 - -0.4
247,996 + -0.6
247,996 + +1.4
247,997 - -0.2
247,997 - +0.1
248,080 + GFF3754 0.18 -1.2
248,080 + GFF3754 0.18 +0.6
248,081 - GFF3754 0.18 +1.1
248,081 - GFF3754 0.18 +2.7
248,081 - GFF3754 0.18 -1.3
248,081 - GFF3754 0.18 -0.9
248,270 - GFF3754 0.38 -0.9
248,320 + GFF3754 0.43 +0.4
248,320 + GFF3754 0.43 -2.2
248,320 + GFF3754 0.43 -0.8
248,320 + GFF3754 0.43 +0.7
248,320 + GFF3754 0.43 +0.8
248,320 + GFF3754 0.43 -1.2
248,320 + GFF3754 0.43 -2.3
248,320 + GFF3754 0.43 +0.9
248,320 + GFF3754 0.43 -0.3
248,321 - GFF3754 0.43 -0.2
248,321 - GFF3754 0.43 -0.2
248,321 - GFF3754 0.43 -1.8
248,321 - GFF3754 0.43 -2.4
248,321 - GFF3754 0.43 +0.5
248,321 - GFF3754 0.43 -3.5
248,321 - GFF3754 0.43 -0.1
248,321 - GFF3754 0.43 -0.8
248,482 + GFF3754 0.60 -2.8
248,482 + GFF3754 0.60 -2.2
248,482 + GFF3754 0.60 +1.4
248,482 + GFF3754 0.60 +0.4
248,482 + GFF3754 0.60 +0.1
248,482 + GFF3754 0.60 +0.2
248,482 + GFF3754 0.60 +0.6
248,482 + GFF3754 0.60 +0.4
248,482 + GFF3754 0.60 -0.8
248,482 + GFF3754 0.60 -0.5
248,482 + GFF3754 0.60 -3.0
248,482 + GFF3754 0.60 +0.5
248,482 + GFF3754 0.60 -0.2
248,482 + GFF3754 0.60 -0.4
248,482 + GFF3754 0.60 -1.3
248,482 + GFF3754 0.60 -0.6
248,482 + GFF3754 0.60 +0.9
248,482 + GFF3754 0.60 +2.7
248,482 + GFF3754 0.60 -0.4
248,482 + GFF3754 0.60 -1.1
248,482 + GFF3754 0.60 -1.3
248,482 + GFF3754 0.60 -0.6
248,482 + GFF3754 0.60 -1.0
248,482 + GFF3754 0.60 -0.6
248,482 + GFF3754 0.60 +1.5
248,482 + GFF3754 0.60 +0.6
248,482 + GFF3754 0.60 -3.5
248,482 + GFF3754 0.60 +1.4
248,483 - GFF3754 0.61 +0.6
248,483 - GFF3754 0.61 -0.8
248,483 - GFF3754 0.61 +2.0
248,483 - GFF3754 0.61 -0.6
248,483 - GFF3754 0.61 -2.8
248,483 - GFF3754 0.61 -1.2
248,483 - GFF3754 0.61 -1.6
248,483 - GFF3754 0.61 +2.3
248,483 - GFF3754 0.61 -1.2
248,483 - GFF3754 0.61 -1.0
248,483 - GFF3754 0.61 +1.6
248,483 - GFF3754 0.61 +0.2
248,483 - GFF3754 0.61 +0.7
248,483 - GFF3754 0.61 +0.7
248,483 - GFF3754 0.61 -2.7
248,483 - GFF3754 0.61 -0.4
248,483 - GFF3754 0.61 -2.1
248,483 - GFF3754 0.61 -0.6
248,483 - GFF3754 0.61 +0.8
248,483 - GFF3754 0.61 +0.1
248,483 - GFF3754 0.61 -0.8
248,542 + GFF3754 0.67 -0.1
248,542 + GFF3754 0.67 -2.5
248,542 + GFF3754 0.67 -0.3
248,542 + GFF3754 0.67 -2.1
248,542 + GFF3754 0.67 +1.4
248,542 + GFF3754 0.67 -0.4
248,542 + GFF3754 0.67 +1.2
248,542 + GFF3754 0.67 -0.3
248,542 + GFF3754 0.67 +0.2
248,543 - GFF3754 0.67 -0.8
248,543 - GFF3754 0.67 +0.6
248,543 - GFF3754 0.67 -0.9
248,543 - GFF3754 0.67 -3.1
248,543 - GFF3754 0.67 +0.4
248,543 - GFF3754 0.67 -0.6
248,543 - GFF3754 0.67 -2.0
248,543 - GFF3754 0.67 -0.4
248,543 - GFF3754 0.67 -1.2
248,578 + GFF3754 0.71 +2.0
248,578 + GFF3754 0.71 +0.0
248,579 - GFF3754 0.71 +0.5
248,579 - GFF3754 0.71 -1.5
248,579 - GFF3754 0.71 -3.1
248,579 - GFF3754 0.71 +0.4
248,579 - GFF3754 0.71 -1.6
248,776 + -2.1
248,776 + +0.1
248,776 + -1.6
248,776 + -0.5
248,777 - -1.0
248,777 - -3.3
248,777 - +0.8
248,777 - -0.2
248,827 + -1.4

Or see this region's nucleotide sequence