Strain Fitness in Variovorax sp. SCN45 around GFF3552

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3551 and GFF3552 are separated by 8 nucleotidesGFF3552 and GFF3553 are separated by 28 nucleotides GFF3551 - MoxR-like ATPases, at 57,332 to 58,411 GFF3551 GFF3552 - Hsp90xo protein, at 58,420 to 60,282 GFF3552 GFF3553 - FOG: TPR repeat, at 60,311 to 62,641 GFF3553 Position (kb) 58 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.456 kb on - strand, within GFF3551at 57.503 kb on + strand, within GFF3551at 57.503 kb on + strand, within GFF3551at 57.503 kb on + strand, within GFF3551at 57.503 kb on + strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.527 kb on + strand, within GFF3551at 57.572 kb on + strand, within GFF3551at 57.572 kb on + strand, within GFF3551at 57.573 kb on - strand, within GFF3551at 57.573 kb on - strand, within GFF3551at 57.689 kb on + strand, within GFF3551at 57.701 kb on + strand, within GFF3551at 58.340 kb on + strandat 58.340 kb on + strandat 58.340 kb on + strandat 58.341 kb on - strandat 58.341 kb on - strandat 58.386 kb on - strandat 58.522 kb on + strandat 58.522 kb on + strandat 58.522 kb on + strandat 58.522 kb on + strandat 58.522 kb on + strandat 58.522 kb on + strandat 58.522 kb on + strandat 58.522 kb on + strandat 58.523 kb on - strandat 58.523 kb on - strandat 58.523 kb on - strandat 58.523 kb on - strandat 58.523 kb on - strandat 58.523 kb on - strandat 58.708 kb on + strand, within GFF3552at 58.732 kb on + strand, within GFF3552at 58.732 kb on + strand, within GFF3552at 58.733 kb on - strand, within GFF3552at 59.017 kb on + strand, within GFF3552at 59.254 kb on + strand, within GFF3552at 59.254 kb on + strand, within GFF3552at 59.254 kb on + strand, within GFF3552at 59.254 kb on + strand, within GFF3552at 59.255 kb on - strand, within GFF3552at 59.255 kb on - strand, within GFF3552at 59.287 kb on + strand, within GFF3552at 59.287 kb on + strand, within GFF3552at 59.287 kb on + strand, within GFF3552at 59.287 kb on + strand, within GFF3552at 59.287 kb on + strand, within GFF3552at 59.287 kb on + strand, within GFF3552at 59.287 kb on + strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.444 kb on + strand, within GFF3552at 59.731 kb on + strand, within GFF3552at 59.731 kb on + strand, within GFF3552at 59.732 kb on - strand, within GFF3552at 59.732 kb on - strand, within GFF3552at 59.732 kb on - strand, within GFF3552at 59.789 kb on - strand, within GFF3552at 60.067 kb on + strand, within GFF3552at 60.067 kb on + strand, within GFF3552at 60.067 kb on + strand, within GFF3552at 60.068 kb on - strand, within GFF3552at 60.381 kb on - strandat 60.381 kb on - strandat 60.497 kb on + strandat 60.497 kb on + strandat 60.497 kb on + strandat 60.497 kb on + strandat 60.498 kb on - strandat 60.498 kb on - strandat 60.575 kb on + strand, within GFF3553at 60.576 kb on - strand, within GFF3553at 60.576 kb on - strand, within GFF3553at 60.576 kb on - strand, within GFF3553at 60.650 kb on + strand, within GFF3553at 60.650 kb on + strand, within GFF3553at 60.650 kb on + strand, within GFF3553at 60.650 kb on + strand, within GFF3553at 60.651 kb on - strand, within GFF3553at 60.651 kb on - strand, within GFF3553at 60.651 kb on - strand, within GFF3553at 60.651 kb on - strand, within GFF3553at 60.651 kb on - strand, within GFF3553at 60.651 kb on - strand, within GFF3553at 60.809 kb on + strand, within GFF3553at 60.810 kb on - strand, within GFF3553at 60.810 kb on - strand, within GFF3553

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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57,455 + GFF3551 0.11 +0.1
57,455 + GFF3551 0.11 -1.2
57,455 + GFF3551 0.11 -1.6
57,455 + GFF3551 0.11 +0.7
57,455 + GFF3551 0.11 +0.5
57,455 + GFF3551 0.11 -0.5
57,455 + GFF3551 0.11 -2.5
57,455 + GFF3551 0.11 +0.1
57,456 - GFF3551 0.11 -1.8
57,503 + GFF3551 0.16 -2.3
57,503 + GFF3551 0.16 -1.0
57,503 + GFF3551 0.16 -2.3
57,503 + GFF3551 0.16 +0.6
57,504 - GFF3551 0.16 -2.7
57,504 - GFF3551 0.16 -0.5
57,504 - GFF3551 0.16 +0.8
57,504 - GFF3551 0.16 -1.6
57,504 - GFF3551 0.16 -1.4
57,504 - GFF3551 0.16 -0.4
57,504 - GFF3551 0.16 -0.9
57,504 - GFF3551 0.16 -1.5
57,504 - GFF3551 0.16 +0.2
57,527 + GFF3551 0.18 +1.0
57,572 + GFF3551 0.22 -3.2
57,572 + GFF3551 0.22 -1.2
57,573 - GFF3551 0.22 +0.4
57,573 - GFF3551 0.22 +0.3
57,689 + GFF3551 0.33 +1.7
57,701 + GFF3551 0.34 -1.4
58,340 + -0.8
58,340 + +1.6
58,340 + -1.3
58,341 - -0.5
58,341 - -2.1
58,386 - -0.5
58,522 + -2.4
58,522 + -1.3
58,522 + -0.2
58,522 + -0.9
58,522 + -1.0
58,522 + -0.6
58,522 + -2.3
58,522 + -1.7
58,523 - -0.7
58,523 - -0.7
58,523 - -0.4
58,523 - -2.3
58,523 - -1.3
58,523 - -2.1
58,708 + GFF3552 0.15 +1.5
58,732 + GFF3552 0.17 -1.1
58,732 + GFF3552 0.17 -1.6
58,733 - GFF3552 0.17 +0.4
59,017 + GFF3552 0.32 -1.8
59,254 + GFF3552 0.45 +0.9
59,254 + GFF3552 0.45 -1.8
59,254 + GFF3552 0.45 -1.6
59,254 + GFF3552 0.45 -1.3
59,255 - GFF3552 0.45 +2.9
59,255 - GFF3552 0.45 +0.1
59,287 + GFF3552 0.47 +2.4
59,287 + GFF3552 0.47 -0.9
59,287 + GFF3552 0.47 -2.7
59,287 + GFF3552 0.47 +2.8
59,287 + GFF3552 0.47 -0.9
59,287 + GFF3552 0.47 -0.7
59,287 + GFF3552 0.47 +0.1
59,288 - GFF3552 0.47 +0.6
59,288 - GFF3552 0.47 +0.0
59,288 - GFF3552 0.47 -1.9
59,288 - GFF3552 0.47 +0.9
59,288 - GFF3552 0.47 +0.5
59,288 - GFF3552 0.47 +3.2
59,288 - GFF3552 0.47 -0.9
59,288 - GFF3552 0.47 +0.8
59,288 - GFF3552 0.47 +1.2
59,444 + GFF3552 0.55 +0.5
59,731 + GFF3552 0.70 +0.3
59,731 + GFF3552 0.70 +0.1
59,732 - GFF3552 0.70 +0.3
59,732 - GFF3552 0.70 -1.3
59,732 - GFF3552 0.70 -0.8
59,789 - GFF3552 0.73 +1.5
60,067 + GFF3552 0.88 -1.4
60,067 + GFF3552 0.88 -0.1
60,067 + GFF3552 0.88 +0.9
60,068 - GFF3552 0.88 -0.9
60,381 - -2.6
60,381 - -1.5
60,497 + +1.0
60,497 + +0.8
60,497 + -1.2
60,497 + +3.1
60,498 - -2.9
60,498 - +0.6
60,575 + GFF3553 0.11 -1.2
60,576 - GFF3553 0.11 -1.6
60,576 - GFF3553 0.11 +0.8
60,576 - GFF3553 0.11 -1.2
60,650 + GFF3553 0.15 -3.2
60,650 + GFF3553 0.15 +1.1
60,650 + GFF3553 0.15 -0.5
60,650 + GFF3553 0.15 +0.0
60,651 - GFF3553 0.15 +1.2
60,651 - GFF3553 0.15 +0.1
60,651 - GFF3553 0.15 -1.7
60,651 - GFF3553 0.15 -1.6
60,651 - GFF3553 0.15 +0.5
60,651 - GFF3553 0.15 +3.6
60,809 + GFF3553 0.21 -1.6
60,810 - GFF3553 0.21 +0.4
60,810 - GFF3553 0.21 -2.0

Or see this region's nucleotide sequence