Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3508 and GFF3509 are separated by 2 nucleotides GFF3509 and GFF3510 overlap by 4 nucleotides
GFF3508 - Multidrug efflux system, outer membrane factor lipoprotein => OpmD of MexHI-OpmD system, at 11,200 to 12,633
GFF3508
GFF3509 - Multidrug efflux system, inner membrane proton/drug antiporter (RND type) => MexI of MexHI-OpmD system, at 12,636 to 15,716
GFF3509
GFF3510 - Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system, at 15,713 to 16,822
GFF3510
Position (kb) 12
13
14
15
16 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 11.699 kb on + strand, within GFF3508 at 11.700 kb on - strand, within GFF3508 at 11.700 kb on - strand, within GFF3508 at 11.897 kb on + strand, within GFF3508 at 12.095 kb on + strand, within GFF3508 at 12.095 kb on + strand, within GFF3508 at 12.096 kb on - strand, within GFF3508 at 12.098 kb on + strand, within GFF3508 at 12.098 kb on + strand, within GFF3508 at 12.098 kb on + strand, within GFF3508 at 12.098 kb on + strand, within GFF3508 at 12.098 kb on + strand, within GFF3508 at 12.099 kb on - strand, within GFF3508 at 12.099 kb on - strand, within GFF3508 at 12.099 kb on - strand, within GFF3508 at 12.554 kb on + strand at 12.555 kb on - strand at 12.614 kb on + strand at 12.718 kb on + strand at 12.718 kb on + strand at 12.718 kb on + strand at 12.718 kb on + strand at 12.719 kb on - strand at 12.719 kb on - strand at 12.719 kb on - strand at 12.719 kb on - strand at 12.719 kb on - strand at 12.719 kb on - strand at 12.719 kb on - strand at 12.719 kb on - strand at 13.018 kb on + strand, within GFF3509 at 13.018 kb on + strand, within GFF3509 at 13.019 kb on - strand, within GFF3509 at 13.019 kb on - strand, within GFF3509 at 13.120 kb on + strand, within GFF3509 at 13.120 kb on + strand, within GFF3509 at 13.120 kb on + strand, within GFF3509 at 13.121 kb on - strand, within GFF3509 at 13.121 kb on - strand, within GFF3509 at 13.141 kb on + strand, within GFF3509 at 13.141 kb on + strand, within GFF3509 at 13.141 kb on + strand, within GFF3509 at 13.141 kb on + strand, within GFF3509 at 13.142 kb on - strand, within GFF3509 at 13.142 kb on - strand, within GFF3509 at 13.225 kb on + strand, within GFF3509 at 13.430 kb on - strand, within GFF3509 at 13.489 kb on + strand, within GFF3509 at 13.522 kb on + strand, within GFF3509 at 13.522 kb on + strand, within GFF3509 at 13.522 kb on + strand, within GFF3509 at 13.522 kb on + strand, within GFF3509 at 13.522 kb on + strand, within GFF3509 at 13.523 kb on - strand, within GFF3509 at 13.523 kb on - strand, within GFF3509 at 14.003 kb on - strand, within GFF3509 at 14.003 kb on - strand, within GFF3509 at 14.003 kb on - strand, within GFF3509 at 14.092 kb on + strand, within GFF3509 at 14.093 kb on - strand, within GFF3509 at 14.179 kb on + strand, within GFF3509 at 14.383 kb on + strand, within GFF3509 at 14.383 kb on + strand, within GFF3509 at 14.384 kb on - strand, within GFF3509 at 14.661 kb on + strand, within GFF3509 at 14.661 kb on + strand, within GFF3509 at 14.662 kb on - strand, within GFF3509 at 14.875 kb on + strand, within GFF3509 at 14.876 kb on - strand, within GFF3509 at 14.876 kb on - strand, within GFF3509 at 14.934 kb on + strand, within GFF3509 at 14.934 kb on + strand, within GFF3509 at 14.935 kb on - strand, within GFF3509 at 15.049 kb on + strand, within GFF3509 at 15.049 kb on + strand, within GFF3509 at 15.050 kb on - strand, within GFF3509 at 15.050 kb on - strand, within GFF3509 at 15.050 kb on - strand, within GFF3509 at 15.050 kb on - strand, within GFF3509 at 15.298 kb on + strand, within GFF3509 at 15.298 kb on + strand, within GFF3509 at 15.298 kb on + strand, within GFF3509 at 15.298 kb on + strand, within GFF3509 at 15.298 kb on + strand, within GFF3509 at 15.299 kb on - strand, within GFF3509 at 15.299 kb on - strand, within GFF3509 at 15.368 kb on - strand, within GFF3509 at 15.368 kb on - strand, within GFF3509 at 15.481 kb on + strand at 15.481 kb on + strand at 15.565 kb on + strand at 15.566 kb on - strand at 15.780 kb on + strand at 15.780 kb on + strand at 15.951 kb on + strand, within GFF3510 at 15.951 kb on + strand, within GFF3510 at 15.951 kb on + strand, within GFF3510 at 15.952 kb on - strand, within GFF3510
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 11,699 + GFF3508 0.35 -0.8 11,700 - GFF3508 0.35 +0.8 11,700 - GFF3508 0.35 -0.2 11,897 + GFF3508 0.49 +3.2 12,095 + GFF3508 0.62 -1.3 12,095 + GFF3508 0.62 -1.0 12,096 - GFF3508 0.62 +0.1 12,098 + GFF3508 0.63 +1.4 12,098 + GFF3508 0.63 -0.6 12,098 + GFF3508 0.63 -3.6 12,098 + GFF3508 0.63 -0.1 12,098 + GFF3508 0.63 -1.9 12,099 - GFF3508 0.63 -1.0 12,099 - GFF3508 0.63 -1.2 12,099 - GFF3508 0.63 -1.2 12,554 + -2.0 12,555 - -3.1 12,614 + +0.0 12,718 + +2.3 12,718 + +3.0 12,718 + +0.1 12,718 + -0.2 12,719 - +1.7 12,719 - +0.5 12,719 - +1.4 12,719 - -0.2 12,719 - -1.7 12,719 - -0.2 12,719 - -0.6 12,719 - +0.5 13,018 + GFF3509 0.12 +1.1 13,018 + GFF3509 0.12 +0.0 13,019 - GFF3509 0.12 +0.4 13,019 - GFF3509 0.12 +0.2 13,120 + GFF3509 0.16 -2.4 13,120 + GFF3509 0.16 -4.2 13,120 + GFF3509 0.16 +0.4 13,121 - GFF3509 0.16 -0.8 13,121 - GFF3509 0.16 -1.4 13,141 + GFF3509 0.16 -0.9 13,141 + GFF3509 0.16 -0.7 13,141 + GFF3509 0.16 -1.4 13,141 + GFF3509 0.16 -1.6 13,142 - GFF3509 0.16 +0.1 13,142 - GFF3509 0.16 -1.6 13,225 + GFF3509 0.19 +1.4 13,430 - GFF3509 0.26 -2.0 13,489 + GFF3509 0.28 -1.5 13,522 + GFF3509 0.29 -0.3 13,522 + GFF3509 0.29 -2.5 13,522 + GFF3509 0.29 -2.0 13,522 + GFF3509 0.29 -1.3 13,522 + GFF3509 0.29 +2.4 13,523 - GFF3509 0.29 -0.1 13,523 - GFF3509 0.29 +0.1 14,003 - GFF3509 0.44 -1.4 14,003 - GFF3509 0.44 +2.4 14,003 - GFF3509 0.44 -0.9 14,092 + GFF3509 0.47 -0.5 14,093 - GFF3509 0.47 -0.6 14,179 + GFF3509 0.50 +1.7 14,383 + GFF3509 0.57 -0.2 14,383 + GFF3509 0.57 -0.0 14,384 - GFF3509 0.57 -1.5 14,661 + GFF3509 0.66 +0.6 14,661 + GFF3509 0.66 +0.3 14,662 - GFF3509 0.66 -1.9 14,875 + GFF3509 0.73 -0.2 14,876 - GFF3509 0.73 -0.9 14,876 - GFF3509 0.73 +0.0 14,934 + GFF3509 0.75 -2.5 14,934 + GFF3509 0.75 +1.4 14,935 - GFF3509 0.75 +1.2 15,049 + GFF3509 0.78 +1.0 15,049 + GFF3509 0.78 -3.1 15,050 - GFF3509 0.78 +1.0 15,050 - GFF3509 0.78 -1.5 15,050 - GFF3509 0.78 +0.6 15,050 - GFF3509 0.78 -2.0 15,298 + GFF3509 0.86 -0.2 15,298 + GFF3509 0.86 -0.2 15,298 + GFF3509 0.86 -0.5 15,298 + GFF3509 0.86 +0.8 15,298 + GFF3509 0.86 -1.6 15,299 - GFF3509 0.86 +0.1 15,299 - GFF3509 0.86 +0.4 15,368 - GFF3509 0.89 +0.3 15,368 - GFF3509 0.89 -0.2 15,481 + -1.5 15,481 + +0.0 15,565 + -1.6 15,566 - +0.5 15,780 + -2.9 15,780 + +0.0 15,951 + GFF3510 0.21 -1.3 15,951 + GFF3510 0.21 -1.7 15,951 + GFF3510 0.21 -0.2 15,952 - GFF3510 0.22 +1.0
Or see this region's nucleotide sequence