Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3454 and GFF3455 are separated by 15 nucleotides GFF3455 and GFF3456 are separated by 2 nucleotides GFF3456 and GFF3457 are separated by 49 nucleotides
GFF3454 - Cys regulon transcriptional activator CysB, at 275,982 to 276,872
GFF3454
GFF3455 - Two component response regulator associated with urea and amide use, at 276,888 to 277,538
GFF3455
GFF3456 - Possible regulatory protein similar to urea ABC transporter, substrate binding protein, at 277,541 to 278,695
GFF3456
GFF3457 - Nitric oxide reductase activation protein NorD, at 278,745 to 280,397
GFF3457
Position (kb) 277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 276.588 kb on + strand, within GFF3454 at 276.588 kb on + strand, within GFF3454 at 276.588 kb on + strand, within GFF3454 at 276.588 kb on + strand, within GFF3454 at 276.588 kb on + strand, within GFF3454 at 276.589 kb on - strand, within GFF3454 at 276.589 kb on - strand, within GFF3454 at 276.713 kb on - strand, within GFF3454 at 276.957 kb on + strand, within GFF3455 at 276.957 kb on + strand, within GFF3455 at 276.958 kb on - strand, within GFF3455 at 276.958 kb on - strand, within GFF3455 at 276.958 kb on - strand, within GFF3455 at 277.476 kb on + strand at 277.476 kb on + strand at 277.476 kb on + strand at 277.600 kb on - strand at 277.600 kb on - strand at 277.827 kb on + strand, within GFF3456 at 277.828 kb on - strand, within GFF3456 at 278.046 kb on + strand, within GFF3456 at 278.047 kb on - strand, within GFF3456 at 278.169 kb on + strand, within GFF3456 at 278.250 kb on + strand, within GFF3456 at 278.251 kb on - strand, within GFF3456 at 278.251 kb on - strand, within GFF3456 at 278.269 kb on - strand, within GFF3456 at 278.344 kb on - strand, within GFF3456 at 278.362 kb on - strand, within GFF3456 at 278.376 kb on + strand, within GFF3456 at 278.377 kb on - strand, within GFF3456 at 278.377 kb on - strand, within GFF3456 at 278.451 kb on + strand, within GFF3456 at 278.452 kb on - strand, within GFF3456 at 278.452 kb on - strand, within GFF3456 at 278.675 kb on + strand at 278.726 kb on + strand at 278.726 kb on + strand at 278.726 kb on + strand at 278.726 kb on + strand at 278.822 kb on - strand at 278.851 kb on + strand at 278.851 kb on + strand at 278.852 kb on - strand at 278.944 kb on + strand, within GFF3457 at 279.145 kb on + strand, within GFF3457 at 279.145 kb on + strand, within GFF3457 at 279.146 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.151 kb on + strand, within GFF3457 at 279.151 kb on + strand, within GFF3457 at 279.151 kb on + strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 276,588 + GFF3454 0.68 +0.2 276,588 + GFF3454 0.68 +0.1 276,588 + GFF3454 0.68 +0.1 276,588 + GFF3454 0.68 -0.5 276,588 + GFF3454 0.68 -1.1 276,589 - GFF3454 0.68 -1.3 276,589 - GFF3454 0.68 -1.0 276,713 - GFF3454 0.82 -0.1 276,957 + GFF3455 0.11 -1.7 276,957 + GFF3455 0.11 -0.4 276,958 - GFF3455 0.11 -0.6 276,958 - GFF3455 0.11 +0.5 276,958 - GFF3455 0.11 +1.3 277,476 + +0.2 277,476 + -0.2 277,476 + -0.3 277,600 - +4.5 277,600 - +3.8 277,827 + GFF3456 0.25 +0.5 277,828 - GFF3456 0.25 +3.1 278,046 + GFF3456 0.44 -2.0 278,047 - GFF3456 0.44 -1.1 278,169 + GFF3456 0.54 -0.0 278,250 + GFF3456 0.61 -0.8 278,251 - GFF3456 0.61 +2.6 278,251 - GFF3456 0.61 +2.0 278,269 - GFF3456 0.63 -0.8 278,344 - GFF3456 0.70 +2.9 278,362 - GFF3456 0.71 +2.4 278,376 + GFF3456 0.72 +1.2 278,377 - GFF3456 0.72 +3.4 278,377 - GFF3456 0.72 +2.8 278,451 + GFF3456 0.79 +0.6 278,452 - GFF3456 0.79 +3.8 278,452 - GFF3456 0.79 +2.0 278,675 + +1.5 278,726 + -3.0 278,726 + -0.7 278,726 + +1.0 278,726 + -0.9 278,822 - +1.4 278,851 + -0.3 278,851 + +1.1 278,852 - -1.1 278,944 + GFF3457 0.12 +1.6 279,145 + GFF3457 0.24 +0.2 279,145 + GFF3457 0.24 -2.6 279,146 - GFF3457 0.24 -0.5 279,149 - GFF3457 0.24 -0.7 279,149 - GFF3457 0.24 -1.1 279,149 - GFF3457 0.24 -1.1 279,149 - GFF3457 0.24 -1.7 279,149 - GFF3457 0.24 -1.3 279,151 + GFF3457 0.25 -0.2 279,151 + GFF3457 0.25 -0.3 279,151 + GFF3457 0.25 +0.3 279,152 - GFF3457 0.25 -0.5 279,152 - GFF3457 0.25 -1.2 279,152 - GFF3457 0.25 -0.4 279,152 - GFF3457 0.25 -0.3 279,152 - GFF3457 0.25 +0.4 279,152 - GFF3457 0.25 -0.5 279,152 - GFF3457 0.25 +0.2 279,152 - GFF3457 0.25 +1.8
Or see this region's nucleotide sequence