Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3356 and GFF3357 are separated by 78 nucleotides GFF3357 and GFF3358 are separated by 127 nucleotides GFF3358 and GFF3359 are separated by 177 nucleotides GFF3359 and GFF3360 are separated by 81 nucleotides GFF3360 and GFF3361 are separated by 22 nucleotides
GFF3356 - Probable transmembrane protein, at 178,163 to 178,588
GFF3356
GFF3357 - hypothetical protein, at 178,667 to 178,921
GFF3357
GFF3358 - Alkanesulfonate utilization operon LysR-family regulator Cbl, at 179,049 to 179,993
GFF3358
GFF3359 - Predicted transcriptional regulator for fatty acid degradation FadP, TetR family, at 180,171 to 180,773
GFF3359
GFF3360 - no description, at 180,855 to 180,968
GFF3360
GFF3361 - Hydrolase, at 180,991 to 181,917
GFF3361
Position (kb) 179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 178.058 kb on + strand at 178.337 kb on + strand, within GFF3356 at 178.337 kb on + strand, within GFF3356 at 178.454 kb on + strand, within GFF3356 at 178.454 kb on + strand, within GFF3356 at 178.454 kb on + strand, within GFF3356 at 178.454 kb on + strand, within GFF3356 at 178.455 kb on - strand, within GFF3356 at 178.455 kb on - strand, within GFF3356 at 178.455 kb on - strand, within GFF3356 at 178.455 kb on - strand, within GFF3356 at 178.455 kb on - strand, within GFF3356 at 178.455 kb on - strand, within GFF3356 at 178.506 kb on - strand, within GFF3356 at 178.607 kb on - strand at 178.607 kb on - strand at 178.767 kb on + strand, within GFF3357 at 178.767 kb on + strand, within GFF3357 at 178.767 kb on + strand, within GFF3357 at 178.767 kb on + strand, within GFF3357 at 178.767 kb on + strand, within GFF3357 at 178.767 kb on + strand, within GFF3357 at 178.767 kb on + strand, within GFF3357 at 178.768 kb on - strand, within GFF3357 at 178.952 kb on + strand at 178.952 kb on + strand at 178.963 kb on + strand at 178.963 kb on + strand at 178.963 kb on + strand at 178.963 kb on + strand at 178.963 kb on + strand at 178.964 kb on - strand at 179.018 kb on + strand at 179.018 kb on + strand at 179.018 kb on + strand at 179.019 kb on - strand at 179.019 kb on - strand at 179.051 kb on - strand at 179.059 kb on + strand at 179.143 kb on + strand at 179.143 kb on + strand at 179.143 kb on + strand at 179.144 kb on - strand, within GFF3358 at 179.144 kb on - strand, within GFF3358 at 179.149 kb on + strand, within GFF3358 at 179.149 kb on + strand, within GFF3358 at 179.149 kb on + strand, within GFF3358 at 179.149 kb on + strand, within GFF3358 at 179.149 kb on + strand, within GFF3358 at 179.150 kb on - strand, within GFF3358 at 179.150 kb on - strand, within GFF3358 at 179.150 kb on - strand, within GFF3358 at 179.150 kb on - strand, within GFF3358 at 179.150 kb on - strand, within GFF3358 at 179.150 kb on - strand, within GFF3358 at 179.150 kb on - strand, within GFF3358 at 179.161 kb on + strand, within GFF3358 at 179.161 kb on + strand, within GFF3358 at 179.161 kb on + strand, within GFF3358 at 179.162 kb on - strand, within GFF3358 at 179.162 kb on - strand, within GFF3358 at 179.255 kb on - strand, within GFF3358 at 179.255 kb on - strand, within GFF3358 at 179.299 kb on + strand, within GFF3358 at 179.299 kb on + strand, within GFF3358 at 179.299 kb on + strand, within GFF3358 at 179.299 kb on + strand, within GFF3358 at 179.299 kb on + strand, within GFF3358 at 179.299 kb on + strand, within GFF3358 at 179.300 kb on - strand, within GFF3358 at 179.300 kb on - strand, within GFF3358 at 179.407 kb on + strand, within GFF3358 at 179.407 kb on + strand, within GFF3358 at 179.408 kb on - strand, within GFF3358 at 180.057 kb on - strand at 180.363 kb on + strand, within GFF3359 at 180.363 kb on + strand, within GFF3359 at 180.364 kb on - strand, within GFF3359 at 180.495 kb on + strand, within GFF3359 at 180.495 kb on + strand, within GFF3359 at 180.495 kb on + strand, within GFF3359 at 180.496 kb on - strand, within GFF3359 at 180.496 kb on - strand, within GFF3359 at 180.496 kb on - strand, within GFF3359 at 180.496 kb on - strand, within GFF3359 at 180.496 kb on - strand, within GFF3359 at 180.762 kb on + strand at 180.885 kb on + strand, within GFF3360 at 180.885 kb on + strand, within GFF3360
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 178,058 + -2.8 178,337 + GFF3356 0.41 +1.5 178,337 + GFF3356 0.41 +0.4 178,454 + GFF3356 0.68 -2.7 178,454 + GFF3356 0.68 +0.7 178,454 + GFF3356 0.68 +0.5 178,454 + GFF3356 0.68 -0.4 178,455 - GFF3356 0.69 -1.8 178,455 - GFF3356 0.69 -0.7 178,455 - GFF3356 0.69 -0.3 178,455 - GFF3356 0.69 -1.3 178,455 - GFF3356 0.69 +0.3 178,455 - GFF3356 0.69 +0.3 178,506 - GFF3356 0.81 -2.2 178,607 - -1.3 178,607 - -2.3 178,767 + GFF3357 0.39 +1.4 178,767 + GFF3357 0.39 +1.5 178,767 + GFF3357 0.39 -0.0 178,767 + GFF3357 0.39 +0.2 178,767 + GFF3357 0.39 +0.1 178,767 + GFF3357 0.39 +1.5 178,767 + GFF3357 0.39 -2.1 178,768 - GFF3357 0.40 -2.2 178,952 + -2.5 178,952 + +1.2 178,963 + +3.2 178,963 + +1.0 178,963 + -2.4 178,963 + +0.3 178,963 + +0.6 178,964 - +0.9 179,018 + +2.0 179,018 + -1.2 179,018 + -2.0 179,019 - -3.0 179,019 - -0.1 179,051 - -2.3 179,059 + -2.7 179,143 + -1.2 179,143 + +0.9 179,143 + -0.7 179,144 - GFF3358 0.10 -1.2 179,144 - GFF3358 0.10 -1.3 179,149 + GFF3358 0.11 -1.1 179,149 + GFF3358 0.11 -2.2 179,149 + GFF3358 0.11 -0.2 179,149 + GFF3358 0.11 +1.6 179,149 + GFF3358 0.11 -2.4 179,150 - GFF3358 0.11 -0.2 179,150 - GFF3358 0.11 -3.0 179,150 - GFF3358 0.11 -0.0 179,150 - GFF3358 0.11 +0.5 179,150 - GFF3358 0.11 -0.5 179,150 - GFF3358 0.11 -0.6 179,150 - GFF3358 0.11 -2.7 179,161 + GFF3358 0.12 -2.0 179,161 + GFF3358 0.12 +1.2 179,161 + GFF3358 0.12 -2.0 179,162 - GFF3358 0.12 -0.1 179,162 - GFF3358 0.12 -0.6 179,255 - GFF3358 0.22 -3.3 179,255 - GFF3358 0.22 +1.6 179,299 + GFF3358 0.26 -0.1 179,299 + GFF3358 0.26 -0.9 179,299 + GFF3358 0.26 -1.4 179,299 + GFF3358 0.26 -3.2 179,299 + GFF3358 0.26 -0.9 179,299 + GFF3358 0.26 -1.2 179,300 - GFF3358 0.27 -2.1 179,300 - GFF3358 0.27 -1.6 179,407 + GFF3358 0.38 -1.5 179,407 + GFF3358 0.38 -1.9 179,408 - GFF3358 0.38 -1.4 180,057 - -1.4 180,363 + GFF3359 0.32 -1.1 180,363 + GFF3359 0.32 -3.6 180,364 - GFF3359 0.32 +0.4 180,495 + GFF3359 0.54 +0.1 180,495 + GFF3359 0.54 -0.5 180,495 + GFF3359 0.54 +0.5 180,496 - GFF3359 0.54 -1.3 180,496 - GFF3359 0.54 -1.4 180,496 - GFF3359 0.54 -1.8 180,496 - GFF3359 0.54 -1.2 180,496 - GFF3359 0.54 +0.2 180,762 + -2.1 180,885 + GFF3360 0.26 -0.4 180,885 + GFF3360 0.26 +0.8
Or see this region's nucleotide sequence