Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3239 and GFF3240 are separated by 11 nucleotides GFF3240 and GFF3241 overlap by 4 nucleotides GFF3241 and GFF3242 are separated by 16 nucleotides
GFF3239 - no description, at 54,213 to 54,605
GFF3239
GFF3240 - hypothetical protein, at 54,617 to 55,237
GFF3240
GFF3241 - hypothetical protein, at 55,234 to 55,698
GFF3241
GFF3242 - FIG00444883: hypothetical protein, at 55,715 to 57,067
GFF3242
Position (kb) 55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 54.426 kb on + strand, within GFF3239 at 54.426 kb on + strand, within GFF3239 at 54.427 kb on - strand, within GFF3239 at 54.429 kb on + strand, within GFF3239 at 54.472 kb on - strand, within GFF3239 at 54.472 kb on - strand, within GFF3239 at 54.830 kb on + strand, within GFF3240 at 54.830 kb on + strand, within GFF3240 at 55.143 kb on - strand, within GFF3240 at 55.163 kb on + strand, within GFF3240 at 55.163 kb on + strand, within GFF3240 at 55.163 kb on + strand, within GFF3240 at 55.163 kb on + strand, within GFF3240 at 55.164 kb on - strand, within GFF3240 at 55.164 kb on - strand, within GFF3240 at 55.164 kb on - strand, within GFF3240 at 55.176 kb on - strand at 55.202 kb on + strand at 55.234 kb on - strand at 55.436 kb on - strand, within GFF3241 at 55.436 kb on - strand, within GFF3241 at 55.436 kb on - strand, within GFF3241 at 55.579 kb on - strand, within GFF3241 at 55.716 kb on + strand at 55.716 kb on + strand at 55.716 kb on + strand at 55.716 kb on + strand at 55.717 kb on - strand at 55.717 kb on - strand at 55.717 kb on - strand at 55.717 kb on - strand at 55.717 kb on - strand at 55.720 kb on + strand at 55.721 kb on - strand at 55.721 kb on - strand at 55.947 kb on + strand, within GFF3242 at 56.001 kb on + strand, within GFF3242 at 56.001 kb on + strand, within GFF3242 at 56.001 kb on + strand, within GFF3242 at 56.001 kb on + strand, within GFF3242 at 56.002 kb on - strand, within GFF3242 at 56.002 kb on - strand, within GFF3242 at 56.002 kb on - strand, within GFF3242 at 56.169 kb on + strand, within GFF3242 at 56.170 kb on - strand, within GFF3242 at 56.170 kb on - strand, within GFF3242 at 56.170 kb on - strand, within GFF3242 at 56.170 kb on - strand, within GFF3242 at 56.254 kb on - strand, within GFF3242 at 56.299 kb on - strand, within GFF3242 at 56.448 kb on + strand, within GFF3242 at 56.448 kb on + strand, within GFF3242 at 56.448 kb on + strand, within GFF3242 at 56.449 kb on - strand, within GFF3242 at 56.449 kb on - strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.683 kb on - strand, within GFF3242 at 56.683 kb on - strand, within GFF3242 at 56.694 kb on + strand, within GFF3242 at 56.694 kb on + strand, within GFF3242 at 56.695 kb on - strand, within GFF3242 at 56.695 kb on - strand, within GFF3242
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 54,426 + GFF3239 0.54 +0.0 54,426 + GFF3239 0.54 -0.1 54,427 - GFF3239 0.54 -0.1 54,429 + GFF3239 0.55 +0.2 54,472 - GFF3239 0.66 -0.3 54,472 - GFF3239 0.66 +2.2 54,830 + GFF3240 0.34 -1.5 54,830 + GFF3240 0.34 +0.9 55,143 - GFF3240 0.85 +0.5 55,163 + GFF3240 0.88 -0.3 55,163 + GFF3240 0.88 +0.9 55,163 + GFF3240 0.88 -1.8 55,163 + GFF3240 0.88 +0.6 55,164 - GFF3240 0.88 +0.9 55,164 - GFF3240 0.88 -1.1 55,164 - GFF3240 0.88 -0.7 55,176 - -0.5 55,202 + -1.4 55,234 - -0.3 55,436 - GFF3241 0.43 +0.4 55,436 - GFF3241 0.43 -1.9 55,436 - GFF3241 0.43 -0.7 55,579 - GFF3241 0.74 -1.3 55,716 + +0.3 55,716 + -0.3 55,716 + -0.1 55,716 + -0.4 55,717 - +0.9 55,717 - +1.3 55,717 - -0.6 55,717 - +1.3 55,717 - -0.5 55,720 + -1.0 55,721 - -1.5 55,721 - -1.0 55,947 + GFF3242 0.17 -2.1 56,001 + GFF3242 0.21 -1.8 56,001 + GFF3242 0.21 +0.1 56,001 + GFF3242 0.21 +0.8 56,001 + GFF3242 0.21 -1.2 56,002 - GFF3242 0.21 -1.1 56,002 - GFF3242 0.21 -3.0 56,002 - GFF3242 0.21 +0.6 56,169 + GFF3242 0.34 -0.1 56,170 - GFF3242 0.34 -1.1 56,170 - GFF3242 0.34 -0.0 56,170 - GFF3242 0.34 -2.3 56,170 - GFF3242 0.34 -0.2 56,254 - GFF3242 0.40 -1.0 56,299 - GFF3242 0.43 +0.9 56,448 + GFF3242 0.54 +0.2 56,448 + GFF3242 0.54 +0.4 56,448 + GFF3242 0.54 -0.7 56,449 - GFF3242 0.54 -2.4 56,449 - GFF3242 0.54 -0.8 56,682 + GFF3242 0.71 -0.1 56,682 + GFF3242 0.71 +2.8 56,682 + GFF3242 0.71 +1.2 56,682 + GFF3242 0.71 +0.4 56,683 - GFF3242 0.72 -1.4 56,683 - GFF3242 0.72 -0.2 56,694 + GFF3242 0.72 -2.2 56,694 + GFF3242 0.72 +1.4 56,695 - GFF3242 0.72 -1.6 56,695 - GFF3242 0.72 +0.1
Or see this region's nucleotide sequence