Strain Fitness in Variovorax sp. SCN45 around GFF3200

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
16,956	-				-0.7
17,025	-				+0.1
17,025	-				+0.6
17,159	+				-0.3
17,160	-				+2.5
17,160	-				+0.9
17,160	-				+1.9
17,193	+				+0.2
17,193	+				-0.3
17,193	+				+0.2
17,194	-				-3.1
17,194	-				+0.5
17,197	+				-0.8
17,197	+				+0.3
17,197	+				+1.7
17,197	+				-1.9
17,197	+				+0.5
17,197	+				+2.2
17,197	+				-1.8
17,197	+				-2.2
17,198	-				-1.7
17,198	-				-1.4
17,198	-				+1.6
17,198	-				-2.1
17,198	-				+1.0
17,198	-				-0.6
17,198	-				-1.9
17,198	-				-0.5
17,198	-				+0.7
17,201	+				-2.7
17,201	+				-2.6
17,201	+				+0.6
17,201	+				-1.2
17,201	+				-0.9
17,201	+				+0.1
17,201	+				-1.4
17,201	+				+1.0
17,201	+				-0.3
17,202	-				+0.8
17,202	-				-0.9
17,202	-				+1.8
17,202	-				+0.3
17,202	-				+0.9
17,202	-				-0.5
17,202	-				+1.2
17,202	-				+0.0
17,202	-				-1.0
17,210	+				-1.2
17,210	+				+0.9
17,257	+				+1.2
17,257	+				+1.1
17,258	-				-0.9
17,273	-				-0.7
17,273	-				-2.8
17,276	+				+0.5
17,370	+				+0.9
17,370	+				+0.1
17,371	-				+0.0
17,473	+				+3.1
17,474	-				+2.5
17,474	-				+0.3
17,515	+				-2.4
17,515	+				+0.9
17,515	+				+1.5
17,515	+				+0.1
17,515	+				-3.8
17,543	+				-0.8
17,543	+				-1.9
17,543	+				+0.9
17,543	+				-0.5
17,543	+				+0.2
17,544	-				-0.8
17,544	-				-0.1
17,580	-				+0.2
17,687	+				+1.9
17,709	+				+1.3
17,710	-				+0.8
17,742	+				-1.2
17,742	+				-0.6
17,743	-				+1.6
17,743	-				-1.4
17,774	+				+1.0
17,775	-				-1.2
17,775	-				-2.8
17,809	+				-0.0
17,809	+				-0.6
17,810	-				+0.9
17,810	-				-2.9
17,843	+				+0.8
17,843	+				-0.5
17,844	-				-0.2
17,891	+				-1.1
17,892	-				+0.4
17,892	-				+0.5
17,940	-				-1.2
17,940	-				+0.7
17,940	-				-1.3
17,940	-				+1.3
17,945	-				-1.2
18,037	+				-0.5
18,038	-				-1.5
18,061	+				-1.0
18,071	-				-2.5
18,105	+				+1.6
18,106	-				-1.8
18,107	+				-1.1
18,108	-				+0.2
18,129	-				-0.1
18,175	+				-1.0
18,176	-		GFF3200	0.10	+0.5
18,227	+		GFF3200	0.12	-0.5
18,227	+		GFF3200	0.12	+0.4
18,262	+		GFF3200	0.14	-0.7
18,306	+		GFF3200	0.15	+0.6
18,516	+		GFF3200	0.24	+1.5
18,516	+		GFF3200	0.24	-0.0
18,517	-		GFF3200	0.24	+0.0
18,519	+		GFF3200	0.24	+0.1
18,519	+		GFF3200	0.24	-2.8
18,520	-		GFF3200	0.24	+2.0
18,606	-		GFF3200	0.28	-1.3
18,774	+		GFF3200	0.34	-3.4
18,775	-		GFF3200	0.35	-0.7
18,775	-		GFF3200	0.35	-2.0
18,806	-		GFF3200	0.36	-1.0
18,995	-		GFF3200	0.44	-0.1
19,137	+		GFF3200	0.49	-1.5
19,167	+		GFF3200	0.51	-0.1
19,167	+		GFF3200	0.51	-3.0
19,168	-		GFF3200	0.51	+0.6
19,168	-		GFF3200	0.51	-0.8
19,330	+		GFF3200	0.57	+0.5
19,330	+		GFF3200	0.57	-0.3
19,331	-		GFF3200	0.57	-0.5
19,331	-		GFF3200	0.57	-1.5
19,331	-		GFF3200	0.57	-2.5
19,331	-		GFF3200	0.57	-3.3
19,331	-		GFF3200	0.57	-0.6
19,490	-		GFF3200	0.64	-0.5
19,587	+		GFF3200	0.68	-0.6
19,587	+		GFF3200	0.68	-0.6
19,587	+		GFF3200	0.68	-3.2
19,588	-		GFF3200	0.68	-0.1
19,618	-		GFF3200	0.69	+0.3
19,731	+		GFF3200	0.74	-2.4
19,731	+		GFF3200	0.74	-0.1
19,731	+		GFF3200	0.74	-0.9
19,761	-		GFF3200	0.75	-1.0
19,780	-		GFF3200	0.76	-1.9
19,889	+		GFF3200	0.80	+2.5
19,889	+		GFF3200	0.80	-1.0
19,890	-		GFF3200	0.80	-2.6
19,896	+		GFF3200	0.80	+4.5
19,925	-		GFF3200	0.82	+1.3
19,994	-		GFF3200	0.84	-1.9
20,098	-		GFF3200	0.89	-1.1
20,098	-		GFF3200	0.89	+1.5
20,332	+				+2.2
20,339	+				+1.2
20,378	-				-1.4
20,389	+				-0.5
20,390	-				-1.5
20,661	-		GFF3201	0.28	+0.6
20,744	+		GFF3201	0.36	+0.6
20,769	+		GFF3201	0.38	+0.6
20,770	-		GFF3201	0.39	-1.1
20,837	+		GFF3201	0.45	-1.3
20,887	+		GFF3201	0.50	-1.2
20,887	+		GFF3201	0.50	+0.0
20,887	+		GFF3201	0.50	-0.1
20,888	-		GFF3201	0.50	+0.5
20,888	-		GFF3201	0.50	-0.1
20,980	+		GFF3201	0.59	-2.2
20,981	-		GFF3201	0.60	-0.5
20,981	-		GFF3201	0.60	+0.0
20,988	+		GFF3201	0.60	-2.1
21,019	+		GFF3201	0.63	-0.2
21,020	-		GFF3201	0.63	-1.6
21,154	-		GFF3201	0.77	-0.7
21,154	-		GFF3201	0.77	-0.1
21,154	-		GFF3201	0.77	+0.8
21,219	+		GFF3201	0.83	+0.3
21,220	-		GFF3201	0.83	-0.4
21,247	+		GFF3201	0.86	+0.4
21,248	-		GFF3201	0.86	+1.2
21,256	+		GFF3201	0.87	-3.2
21,256	+		GFF3201	0.87	+0.4
21,292	+				-2.4
21,292	+				-0.8
21,372	-				-0.4