Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3182 and GFF3183 are separated by 33 nucleotides GFF3183 and GFF3184 are separated by 70 nucleotides GFF3184 and GFF3185 are separated by 64 nucleotides
GFF3182 - Cyclopropane-fatty-acyl-phospholipid synthase-like protein, clusters with FIG005069, at 624,125 to 625,171
GFF3182
GFF3183 - no description, at 625,205 to 625,480
GFF3183
GFF3184 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 625,551 to 627,512
GFF3184
GFF3185 - SAM-dependent methyltransferase, at 627,577 to 628,395
GFF3185
Position (kb) 625
626
627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 624.694 kb on - strand, within GFF3182 at 624.904 kb on - strand, within GFF3182 at 624.954 kb on + strand, within GFF3182 at 624.954 kb on + strand, within GFF3182 at 624.955 kb on - strand, within GFF3182 at 625.467 kb on + strand at 625.467 kb on + strand at 625.467 kb on + strand at 625.467 kb on + strand at 625.467 kb on + strand at 625.467 kb on + strand at 625.467 kb on + strand at 625.468 kb on - strand at 625.468 kb on - strand at 625.468 kb on - strand at 625.468 kb on - strand at 625.468 kb on - strand at 625.468 kb on - strand at 625.468 kb on - strand at 625.468 kb on - strand at 625.468 kb on - strand at 625.468 kb on - strand at 625.468 kb on - strand at 625.471 kb on + strand at 625.471 kb on + strand at 625.471 kb on + strand at 625.472 kb on - strand at 625.472 kb on - strand at 625.472 kb on - strand at 625.472 kb on - strand at 625.704 kb on + strand at 625.767 kb on + strand, within GFF3184 at 625.767 kb on + strand, within GFF3184 at 625.768 kb on - strand, within GFF3184 at 625.768 kb on - strand, within GFF3184 at 625.884 kb on + strand, within GFF3184 at 625.884 kb on + strand, within GFF3184 at 625.885 kb on - strand, within GFF3184 at 625.908 kb on + strand, within GFF3184 at 625.909 kb on - strand, within GFF3184 at 626.034 kb on + strand, within GFF3184 at 626.034 kb on + strand, within GFF3184 at 626.035 kb on - strand, within GFF3184 at 626.476 kb on + strand, within GFF3184 at 626.476 kb on + strand, within GFF3184 at 626.664 kb on + strand, within GFF3184 at 626.664 kb on + strand, within GFF3184 at 626.664 kb on + strand, within GFF3184 at 626.665 kb on - strand, within GFF3184 at 626.665 kb on - strand, within GFF3184 at 626.694 kb on + strand, within GFF3184 at 626.694 kb on + strand, within GFF3184 at 626.694 kb on + strand, within GFF3184 at 626.695 kb on - strand, within GFF3184 at 626.793 kb on + strand, within GFF3184 at 626.794 kb on - strand, within GFF3184 at 626.796 kb on + strand, within GFF3184 at 626.797 kb on - strand, within GFF3184 at 626.797 kb on - strand, within GFF3184 at 627.163 kb on + strand, within GFF3184 at 627.163 kb on + strand, within GFF3184 at 627.163 kb on + strand, within GFF3184 at 627.164 kb on - strand, within GFF3184 at 627.164 kb on - strand, within GFF3184 at 627.164 kb on - strand, within GFF3184 at 627.164 kb on - strand, within GFF3184 at 627.164 kb on - strand, within GFF3184 at 627.164 kb on - strand, within GFF3184 at 627.510 kb on + strand at 627.511 kb on - strand at 627.511 kb on - strand at 627.511 kb on - strand at 627.734 kb on + strand, within GFF3185 at 627.734 kb on + strand, within GFF3185 at 627.735 kb on - strand, within GFF3185 at 627.735 kb on - strand, within GFF3185 at 627.735 kb on - strand, within GFF3185 at 627.735 kb on - strand, within GFF3185 at 627.851 kb on + strand, within GFF3185 at 627.852 kb on - strand, within GFF3185 at 628.010 kb on + strand, within GFF3185 at 628.157 kb on + strand, within GFF3185 at 628.157 kb on + strand, within GFF3185 at 628.281 kb on - strand, within GFF3185 at 628.306 kb on + strand, within GFF3185 at 628.313 kb on + strand, within GFF3185 at 628.314 kb on - strand at 628.375 kb on + strand at 628.375 kb on + strand at 628.375 kb on + strand at 628.376 kb on - strand at 628.376 kb on - strand at 628.396 kb on + strand at 628.397 kb on - strand at 628.452 kb on - strand at 628.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 624,694 - GFF3182 0.54 -2.0 624,904 - GFF3182 0.74 -1.1 624,954 + GFF3182 0.79 -3.0 624,954 + GFF3182 0.79 +0.8 624,955 - GFF3182 0.79 -2.3 625,467 + +0.5 625,467 + +0.5 625,467 + +0.1 625,467 + -1.2 625,467 + -0.3 625,467 + +0.7 625,467 + -2.1 625,468 - -0.3 625,468 - -0.9 625,468 - -0.3 625,468 - +0.1 625,468 - -2.4 625,468 - +5.1 625,468 - +1.6 625,468 - +0.3 625,468 - -0.4 625,468 - -2.8 625,468 - +0.7 625,471 + +0.2 625,471 + -1.9 625,471 + +3.3 625,472 - -0.3 625,472 - +0.4 625,472 - +1.1 625,472 - +0.3 625,704 + -0.3 625,767 + GFF3184 0.11 -1.1 625,767 + GFF3184 0.11 -0.7 625,768 - GFF3184 0.11 -2.2 625,768 - GFF3184 0.11 -2.2 625,884 + GFF3184 0.17 -0.2 625,884 + GFF3184 0.17 -1.5 625,885 - GFF3184 0.17 +1.1 625,908 + GFF3184 0.18 -1.8 625,909 - GFF3184 0.18 -1.8 626,034 + GFF3184 0.25 -0.7 626,034 + GFF3184 0.25 -1.7 626,035 - GFF3184 0.25 +0.3 626,476 + GFF3184 0.47 -0.5 626,476 + GFF3184 0.47 +0.4 626,664 + GFF3184 0.57 -0.0 626,664 + GFF3184 0.57 +0.5 626,664 + GFF3184 0.57 +0.7 626,665 - GFF3184 0.57 +0.8 626,665 - GFF3184 0.57 -1.1 626,694 + GFF3184 0.58 -0.7 626,694 + GFF3184 0.58 -0.3 626,694 + GFF3184 0.58 -0.0 626,695 - GFF3184 0.58 +0.1 626,793 + GFF3184 0.63 +0.4 626,794 - GFF3184 0.63 -0.9 626,796 + GFF3184 0.63 -0.3 626,797 - GFF3184 0.64 +2.6 626,797 - GFF3184 0.64 +0.1 627,163 + GFF3184 0.82 +0.5 627,163 + GFF3184 0.82 -2.3 627,163 + GFF3184 0.82 -2.9 627,164 - GFF3184 0.82 -0.3 627,164 - GFF3184 0.82 -2.6 627,164 - GFF3184 0.82 -1.3 627,164 - GFF3184 0.82 -1.1 627,164 - GFF3184 0.82 -1.8 627,164 - GFF3184 0.82 -1.3 627,510 + +1.1 627,511 - +1.9 627,511 - -1.5 627,511 - +0.9 627,734 + GFF3185 0.19 -3.2 627,734 + GFF3185 0.19 -2.0 627,735 - GFF3185 0.19 -2.2 627,735 - GFF3185 0.19 +0.2 627,735 - GFF3185 0.19 +0.2 627,735 - GFF3185 0.19 -0.7 627,851 + GFF3185 0.33 +0.5 627,852 - GFF3185 0.34 -0.6 628,010 + GFF3185 0.53 -1.1 628,157 + GFF3185 0.71 -0.0 628,157 + GFF3185 0.71 -0.1 628,281 - GFF3185 0.86 +0.0 628,306 + GFF3185 0.89 +2.2 628,313 + GFF3185 0.90 -0.5 628,314 - -2.9 628,375 + +0.6 628,375 + -0.7 628,375 + -2.1 628,376 - +0.4 628,376 - +1.2 628,396 + -0.3 628,397 - -1.2 628,452 - -0.9 628,452 - -1.7
Or see this region's nucleotide sequence