Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3069 and GFF3070 are separated by 18 nucleotides GFF3070 and GFF3071 overlap by 4 nucleotides GFF3071 and GFF3072 overlap by 16 nucleotides GFF3072 and GFF3073 are separated by 50 nucleotides
GFF3069 - Glutamine synthetase type I (EC 6.3.1.2), at 502,704 to 504,119
GFF3069
GFF3070 - no description, at 504,138 to 504,269
GFF3070
GFF3071 - ADP-ribose pyrophosphatase of COG1058 family (EC 3.6.1.13), at 504,266 to 505,078
GFF3071
GFF3072 - Putative transmembrane protein, at 505,063 to 505,953
GFF3072
GFF3073 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 506,004 to 506,978
GFF3073
Position (kb) 505
506 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.319 kb on + strand at 504.319 kb on + strand at 504.330 kb on + strand at 504.330 kb on + strand at 504.330 kb on + strand at 504.331 kb on - strand at 504.331 kb on - strand at 504.331 kb on - strand at 504.388 kb on - strand, within GFF3071 at 504.444 kb on + strand, within GFF3071 at 504.540 kb on + strand, within GFF3071 at 504.540 kb on + strand, within GFF3071 at 504.541 kb on - strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.640 kb on - strand, within GFF3071 at 504.640 kb on - strand, within GFF3071 at 504.640 kb on - strand, within GFF3071 at 504.640 kb on - strand, within GFF3071 at 504.720 kb on + strand, within GFF3071 at 504.720 kb on + strand, within GFF3071 at 504.939 kb on + strand, within GFF3071 at 504.939 kb on + strand, within GFF3071 at 504.939 kb on + strand, within GFF3071 at 504.939 kb on + strand, within GFF3071 at 504.940 kb on - strand, within GFF3071 at 504.940 kb on - strand, within GFF3071 at 504.940 kb on - strand, within GFF3071 at 504.940 kb on - strand, within GFF3071 at 505.196 kb on + strand, within GFF3072 at 505.196 kb on + strand, within GFF3072 at 505.196 kb on + strand, within GFF3072 at 505.196 kb on + strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.328 kb on + strand, within GFF3072 at 505.329 kb on - strand, within GFF3072 at 505.830 kb on - strand, within GFF3072 at 505.830 kb on - strand, within GFF3072 at 505.836 kb on - strand, within GFF3072 at 505.913 kb on + strand at 505.914 kb on - strand at 505.914 kb on - strand at 506.065 kb on + strand at 506.539 kb on + strand, within GFF3073 at 506.566 kb on + strand, within GFF3073 at 506.566 kb on + strand, within GFF3073 at 506.567 kb on - strand, within GFF3073 at 506.734 kb on + strand, within GFF3073 at 506.734 kb on + strand, within GFF3073 at 506.735 kb on - strand, within GFF3073
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 504,153 - GFF3070 0.11 +2.1 504,153 - GFF3070 0.11 +1.0 504,153 - GFF3070 0.11 +0.2 504,153 - GFF3070 0.11 +0.6 504,153 - GFF3070 0.11 +0.4 504,153 - GFF3070 0.11 -0.7 504,153 - GFF3070 0.11 -1.0 504,319 + +1.2 504,319 + -1.5 504,330 + +0.8 504,330 + -2.3 504,330 + +0.3 504,331 - -1.8 504,331 - -0.2 504,331 - -0.3 504,388 - GFF3071 0.15 +3.6 504,444 + GFF3071 0.22 -1.1 504,540 + GFF3071 0.34 +1.8 504,540 + GFF3071 0.34 +0.4 504,541 - GFF3071 0.34 -0.5 504,639 + GFF3071 0.46 +0.7 504,639 + GFF3071 0.46 +0.1 504,639 + GFF3071 0.46 -2.9 504,639 + GFF3071 0.46 -1.1 504,639 + GFF3071 0.46 -0.7 504,640 - GFF3071 0.46 -1.7 504,640 - GFF3071 0.46 -3.9 504,640 - GFF3071 0.46 -2.5 504,640 - GFF3071 0.46 -0.3 504,720 + GFF3071 0.56 +1.1 504,720 + GFF3071 0.56 -2.7 504,939 + GFF3071 0.83 -0.2 504,939 + GFF3071 0.83 -2.0 504,939 + GFF3071 0.83 -1.5 504,939 + GFF3071 0.83 -0.0 504,940 - GFF3071 0.83 -1.7 504,940 - GFF3071 0.83 -1.0 504,940 - GFF3071 0.83 +1.7 504,940 - GFF3071 0.83 -0.4 505,196 + GFF3072 0.15 +2.3 505,196 + GFF3072 0.15 -0.2 505,196 + GFF3072 0.15 -0.5 505,196 + GFF3072 0.15 +0.0 505,197 - GFF3072 0.15 +1.1 505,197 - GFF3072 0.15 +0.7 505,197 - GFF3072 0.15 +2.1 505,197 - GFF3072 0.15 +0.2 505,197 - GFF3072 0.15 -1.5 505,197 - GFF3072 0.15 -0.1 505,238 + GFF3072 0.20 +0.3 505,238 + GFF3072 0.20 -0.9 505,238 + GFF3072 0.20 -0.3 505,238 + GFF3072 0.20 -1.5 505,238 + GFF3072 0.20 -2.0 505,238 + GFF3072 0.20 -2.8 505,238 + GFF3072 0.20 -0.7 505,238 + GFF3072 0.20 +0.4 505,238 + GFF3072 0.20 -1.3 505,239 - GFF3072 0.20 +2.8 505,239 - GFF3072 0.20 +0.4 505,239 - GFF3072 0.20 +0.7 505,239 - GFF3072 0.20 -2.1 505,239 - GFF3072 0.20 +0.5 505,239 - GFF3072 0.20 -1.9 505,239 - GFF3072 0.20 +0.0 505,239 - GFF3072 0.20 +2.1 505,239 - GFF3072 0.20 +3.1 505,239 - GFF3072 0.20 -0.3 505,239 - GFF3072 0.20 +1.1 505,328 + GFF3072 0.30 -1.2 505,329 - GFF3072 0.30 -0.9 505,830 - GFF3072 0.86 +0.7 505,830 - GFF3072 0.86 +0.5 505,836 - GFF3072 0.87 +0.7 505,913 + -0.3 505,914 - -1.1 505,914 - -0.9 506,065 + -0.3 506,539 + GFF3073 0.55 -2.5 506,566 + GFF3073 0.58 +0.8 506,566 + GFF3073 0.58 -0.5 506,567 - GFF3073 0.58 +0.1 506,734 + GFF3073 0.75 +1.1 506,734 + GFF3073 0.75 -0.3 506,735 - GFF3073 0.75 -2.9
Or see this region's nucleotide sequence