Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3016 and GFF3017 are separated by 13 nucleotides GFF3017 and GFF3018 are separated by 5 nucleotides
GFF3016 - T6SS component TssG (ImpH/VasB), at 443,069 to 444,082
GFF3016
GFF3017 - T6SS AAA+ chaperone ClpV (TssH), at 444,096 to 446,837
GFF3017
GFF3018 - VgrG protein, at 446,843 to 448,783
GFF3018
Position (kb) 444
445
446
447 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 444.096 kb on - strand at 444.096 kb on - strand at 444.192 kb on + strand at 444.732 kb on + strand, within GFF3017 at 445.197 kb on + strand, within GFF3017 at 445.197 kb on + strand, within GFF3017 at 445.198 kb on - strand, within GFF3017 at 445.198 kb on - strand, within GFF3017 at 445.206 kb on + strand, within GFF3017 at 445.206 kb on + strand, within GFF3017 at 445.207 kb on - strand, within GFF3017 at 445.207 kb on - strand, within GFF3017 at 445.380 kb on + strand, within GFF3017 at 445.380 kb on + strand, within GFF3017 at 445.380 kb on + strand, within GFF3017 at 445.381 kb on - strand, within GFF3017 at 446.095 kb on - strand, within GFF3017 at 446.239 kb on - strand, within GFF3017 at 447.092 kb on + strand, within GFF3018 at 447.092 kb on + strand, within GFF3018 at 447.092 kb on + strand, within GFF3018 at 447.093 kb on - strand, within GFF3018 at 447.093 kb on - strand, within GFF3018 at 447.122 kb on + strand, within GFF3018 at 447.122 kb on + strand, within GFF3018 at 447.122 kb on + strand, within GFF3018 at 447.182 kb on + strand, within GFF3018 at 447.183 kb on - strand, within GFF3018 at 447.183 kb on - strand, within GFF3018 at 447.266 kb on + strand, within GFF3018 at 447.266 kb on + strand, within GFF3018 at 447.266 kb on + strand, within GFF3018 at 447.266 kb on + strand, within GFF3018 at 447.267 kb on - strand, within GFF3018 at 447.267 kb on - strand, within GFF3018 at 447.293 kb on + strand, within GFF3018 at 447.351 kb on - strand, within GFF3018 at 447.479 kb on + strand, within GFF3018 at 447.539 kb on + strand, within GFF3018 at 447.608 kb on + strand, within GFF3018 at 447.782 kb on + strand, within GFF3018 at 447.782 kb on + strand, within GFF3018 at 447.782 kb on + strand, within GFF3018 at 447.782 kb on + strand, within GFF3018 at 447.782 kb on + strand, within GFF3018 at 447.783 kb on - strand, within GFF3018 at 447.824 kb on + strand, within GFF3018 at 447.824 kb on + strand, within GFF3018 at 447.824 kb on + strand, within GFF3018 at 447.825 kb on - strand, within GFF3018 at 447.825 kb on - strand, within GFF3018 at 447.825 kb on - strand, within GFF3018 at 447.825 kb on - strand, within GFF3018
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 444,096 - +1.6 444,096 - -1.9 444,192 + -2.2 444,732 + GFF3017 0.23 -2.6 445,197 + GFF3017 0.40 -2.0 445,197 + GFF3017 0.40 -0.9 445,198 - GFF3017 0.40 -0.0 445,198 - GFF3017 0.40 -1.1 445,206 + GFF3017 0.40 +0.9 445,206 + GFF3017 0.40 -0.7 445,207 - GFF3017 0.41 -1.1 445,207 - GFF3017 0.41 -2.6 445,380 + GFF3017 0.47 +0.1 445,380 + GFF3017 0.47 -1.6 445,380 + GFF3017 0.47 -1.7 445,381 - GFF3017 0.47 -0.5 446,095 - GFF3017 0.73 -4.0 446,239 - GFF3017 0.78 +0.1 447,092 + GFF3018 0.13 -0.3 447,092 + GFF3018 0.13 -2.4 447,092 + GFF3018 0.13 -3.5 447,093 - GFF3018 0.13 -0.5 447,093 - GFF3018 0.13 -0.9 447,122 + GFF3018 0.14 +1.1 447,122 + GFF3018 0.14 -1.3 447,122 + GFF3018 0.14 +0.5 447,182 + GFF3018 0.17 +2.3 447,183 - GFF3018 0.18 -2.7 447,183 - GFF3018 0.18 +0.6 447,266 + GFF3018 0.22 -1.8 447,266 + GFF3018 0.22 +0.0 447,266 + GFF3018 0.22 -1.5 447,266 + GFF3018 0.22 -1.5 447,267 - GFF3018 0.22 -1.9 447,267 - GFF3018 0.22 -2.2 447,293 + GFF3018 0.23 +1.0 447,351 - GFF3018 0.26 +0.1 447,479 + GFF3018 0.33 -3.7 447,539 + GFF3018 0.36 +1.3 447,608 + GFF3018 0.39 -1.4 447,782 + GFF3018 0.48 -2.6 447,782 + GFF3018 0.48 -0.3 447,782 + GFF3018 0.48 -0.4 447,782 + GFF3018 0.48 -1.6 447,782 + GFF3018 0.48 -1.6 447,783 - GFF3018 0.48 +0.5 447,824 + GFF3018 0.51 -0.8 447,824 + GFF3018 0.51 +1.0 447,824 + GFF3018 0.51 +0.1 447,825 - GFF3018 0.51 -0.7 447,825 - GFF3018 0.51 -2.5 447,825 - GFF3018 0.51 -1.5 447,825 - GFF3018 0.51 -1.2
Or see this region's nucleotide sequence