Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2954 and GFF2955 are separated by 143 nucleotides GFF2955 and GFF2956 overlap by 4 nucleotides GFF2956 and GFF2957 overlap by 4 nucleotides
GFF2954 - 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44), at 377,188 to 378,609
GFF2954
GFF2955 - hypothetical protein, at 378,753 to 380,450
GFF2955
GFF2956 - Uncharacterized protein YfaT, at 380,447 to 381,133
GFF2956
GFF2957 - UPF0192 protein YfaS, at 381,130 to 385,842
GFF2957
Position (kb) 378
379
380
381 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 377.758 kb on + strand, within GFF2954 at 377.758 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.873 kb on - strand, within GFF2954 at 377.873 kb on - strand, within GFF2954 at 377.873 kb on - strand, within GFF2954 at 377.873 kb on - strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.184 kb on + strand, within GFF2954 at 378.184 kb on + strand, within GFF2954 at 378.184 kb on + strand, within GFF2954 at 378.184 kb on + strand, within GFF2954 at 378.185 kb on - strand, within GFF2954 at 378.185 kb on - strand, within GFF2954 at 378.185 kb on - strand, within GFF2954 at 378.185 kb on - strand, within GFF2954 at 378.466 kb on + strand, within GFF2954 at 378.467 kb on - strand at 378.467 kb on - strand at 378.467 kb on - strand at 378.469 kb on + strand at 378.469 kb on + strand at 378.469 kb on + strand at 378.470 kb on - strand at 378.470 kb on - strand at 378.470 kb on - strand at 378.470 kb on - strand at 378.478 kb on + strand at 378.478 kb on + strand at 378.478 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.897 kb on + strand at 378.898 kb on - strand at 378.898 kb on - strand at 378.898 kb on - strand at 378.898 kb on - strand at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.990 kb on + strand, within GFF2955 at 378.990 kb on + strand, within GFF2955 at 378.990 kb on + strand, within GFF2955 at 378.990 kb on + strand, within GFF2955 at 378.991 kb on - strand, within GFF2955 at 378.991 kb on - strand, within GFF2955 at 378.992 kb on - strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.045 kb on - strand, within GFF2955 at 379.143 kb on + strand, within GFF2955 at 379.272 kb on + strand, within GFF2955 at 379.272 kb on + strand, within GFF2955 at 379.272 kb on + strand, within GFF2955 at 379.272 kb on + strand, within GFF2955 at 379.849 kb on - strand, within GFF2955 at 379.849 kb on - strand, within GFF2955 at 380.040 kb on + strand, within GFF2955 at 380.040 kb on + strand, within GFF2955 at 380.040 kb on + strand, within GFF2955 at 380.041 kb on - strand, within GFF2955 at 380.041 kb on - strand, within GFF2955 at 380.064 kb on + strand, within GFF2955 at 380.064 kb on + strand, within GFF2955 at 380.064 kb on + strand, within GFF2955 at 380.064 kb on + strand, within GFF2955 at 380.064 kb on + strand, within GFF2955 at 380.064 kb on + strand, within GFF2955 at 380.065 kb on - strand, within GFF2955 at 380.065 kb on - strand, within GFF2955 at 380.065 kb on - strand, within GFF2955 at 380.065 kb on - strand, within GFF2955 at 380.065 kb on - strand, within GFF2955 at 380.843 kb on + strand, within GFF2956 at 380.843 kb on + strand, within GFF2956 at 380.843 kb on + strand, within GFF2956 at 380.843 kb on + strand, within GFF2956 at 380.844 kb on - strand, within GFF2956 at 380.844 kb on - strand, within GFF2956 at 380.844 kb on - strand, within GFF2956 at 380.930 kb on + strand, within GFF2956 at 380.931 kb on - strand, within GFF2956 at 380.931 kb on - strand, within GFF2956 at 380.931 kb on - strand, within GFF2956 at 380.931 kb on - strand, within GFF2956 at 380.975 kb on + strand, within GFF2956 at 380.975 kb on + strand, within GFF2956 at 380.975 kb on + strand, within GFF2956 at 380.975 kb on + strand, within GFF2956 at 380.975 kb on + strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.984 kb on + strand, within GFF2956 at 380.985 kb on - strand, within GFF2956 at 381.280 kb on + strand at 381.406 kb on + strand at 381.406 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 377,758 + GFF2954 0.40 +0.2 377,758 + GFF2954 0.40 +1.7 377,788 + GFF2954 0.42 +0.9 377,788 + GFF2954 0.42 +0.4 377,788 + GFF2954 0.42 +0.9 377,788 + GFF2954 0.42 -2.7 377,788 + GFF2954 0.42 +0.9 377,788 + GFF2954 0.42 -0.0 377,788 + GFF2954 0.42 +2.1 377,788 + GFF2954 0.42 -0.6 377,788 + GFF2954 0.42 +4.1 377,789 - GFF2954 0.42 -4.5 377,789 - GFF2954 0.42 +1.2 377,789 - GFF2954 0.42 +0.5 377,789 - GFF2954 0.42 -3.6 377,789 - GFF2954 0.42 -0.9 377,872 + GFF2954 0.48 +0.9 377,872 + GFF2954 0.48 -0.7 377,872 + GFF2954 0.48 +0.2 377,872 + GFF2954 0.48 -1.5 377,872 + GFF2954 0.48 -0.5 377,873 - GFF2954 0.48 -0.9 377,873 - GFF2954 0.48 +0.9 377,873 - GFF2954 0.48 +0.2 377,873 - GFF2954 0.48 -0.9 378,163 + GFF2954 0.69 +1.1 378,163 + GFF2954 0.69 +1.3 378,163 + GFF2954 0.69 -1.9 378,163 + GFF2954 0.69 +0.6 378,163 + GFF2954 0.69 +0.4 378,163 + GFF2954 0.69 -2.3 378,163 + GFF2954 0.69 +0.5 378,164 - GFF2954 0.69 -2.4 378,164 - GFF2954 0.69 +0.1 378,164 - GFF2954 0.69 +0.8 378,164 - GFF2954 0.69 +2.1 378,164 - GFF2954 0.69 -1.1 378,164 - GFF2954 0.69 +1.3 378,164 - GFF2954 0.69 +1.5 378,184 + GFF2954 0.70 -2.9 378,184 + GFF2954 0.70 +0.1 378,184 + GFF2954 0.70 -2.2 378,184 + GFF2954 0.70 -0.8 378,185 - GFF2954 0.70 +1.8 378,185 - GFF2954 0.70 -0.2 378,185 - GFF2954 0.70 -3.2 378,185 - GFF2954 0.70 +1.4 378,466 + GFF2954 0.90 +0.4 378,467 - +2.0 378,467 - -2.4 378,467 - -0.2 378,469 + +0.3 378,469 + +1.1 378,469 + +0.8 378,470 - +0.5 378,470 - -1.4 378,470 - -0.7 378,470 - -2.4 378,478 + -0.8 378,478 + +0.8 378,478 + +1.3 378,544 + -0.2 378,544 + -0.7 378,544 + -0.4 378,544 + -0.2 378,544 + -1.5 378,544 + +2.3 378,544 + -1.9 378,544 + -0.2 378,544 + +0.2 378,544 + +0.9 378,544 + -0.9 378,544 + +2.1 378,545 - +2.1 378,545 - +0.4 378,545 - -0.7 378,545 - +0.9 378,545 - -2.7 378,545 - +1.4 378,545 - +0.3 378,545 - -1.3 378,545 - +1.9 378,545 - -0.3 378,545 - +1.4 378,545 - -3.8 378,897 + +0.5 378,898 - +0.1 378,898 - +2.1 378,898 - -1.9 378,898 - -0.4 378,987 + GFF2955 0.14 -0.6 378,987 + GFF2955 0.14 -0.8 378,987 + GFF2955 0.14 -3.3 378,987 + GFF2955 0.14 -0.7 378,987 + GFF2955 0.14 -2.3 378,987 + GFF2955 0.14 -0.8 378,987 + GFF2955 0.14 +2.1 378,988 - GFF2955 0.14 -0.2 378,988 - GFF2955 0.14 -2.0 378,988 - GFF2955 0.14 -0.5 378,988 - GFF2955 0.14 -0.6 378,988 - GFF2955 0.14 +0.4 378,990 + GFF2955 0.14 +1.1 378,990 + GFF2955 0.14 -0.5 378,990 + GFF2955 0.14 +0.5 378,990 + GFF2955 0.14 +1.0 378,991 - GFF2955 0.14 -1.2 378,991 - GFF2955 0.14 -0.1 378,992 - GFF2955 0.14 +0.1 379,044 + GFF2955 0.17 -3.4 379,044 + GFF2955 0.17 -2.2 379,044 + GFF2955 0.17 +1.4 379,044 + GFF2955 0.17 -3.2 379,044 + GFF2955 0.17 +0.0 379,045 - GFF2955 0.17 -1.2 379,143 + GFF2955 0.23 -0.7 379,272 + GFF2955 0.31 -0.2 379,272 + GFF2955 0.31 +0.1 379,272 + GFF2955 0.31 +0.8 379,272 + GFF2955 0.31 +2.4 379,849 - GFF2955 0.65 -0.6 379,849 - GFF2955 0.65 -3.2 380,040 + GFF2955 0.76 +2.5 380,040 + GFF2955 0.76 -2.1 380,040 + GFF2955 0.76 +1.1 380,041 - GFF2955 0.76 -1.0 380,041 - GFF2955 0.76 -3.2 380,064 + GFF2955 0.77 +0.6 380,064 + GFF2955 0.77 -1.3 380,064 + GFF2955 0.77 -0.0 380,064 + GFF2955 0.77 -0.9 380,064 + GFF2955 0.77 +0.3 380,064 + GFF2955 0.77 +0.2 380,065 - GFF2955 0.77 -2.4 380,065 - GFF2955 0.77 +0.8 380,065 - GFF2955 0.77 -2.1 380,065 - GFF2955 0.77 -0.5 380,065 - GFF2955 0.77 -1.2 380,843 + GFF2956 0.58 -2.5 380,843 + GFF2956 0.58 -1.8 380,843 + GFF2956 0.58 +1.5 380,843 + GFF2956 0.58 +0.1 380,844 - GFF2956 0.58 -1.2 380,844 - GFF2956 0.58 -1.2 380,844 - GFF2956 0.58 -1.6 380,930 + GFF2956 0.70 -1.2 380,931 - GFF2956 0.70 -0.7 380,931 - GFF2956 0.70 -1.1 380,931 - GFF2956 0.70 +2.4 380,931 - GFF2956 0.70 -0.7 380,975 + GFF2956 0.77 +3.1 380,975 + GFF2956 0.77 +1.1 380,975 + GFF2956 0.77 -1.6 380,975 + GFF2956 0.77 -0.2 380,975 + GFF2956 0.77 -0.4 380,976 - GFF2956 0.77 +0.3 380,976 - GFF2956 0.77 -2.0 380,976 - GFF2956 0.77 -0.3 380,976 - GFF2956 0.77 -1.6 380,976 - GFF2956 0.77 -1.2 380,976 - GFF2956 0.77 -0.9 380,976 - GFF2956 0.77 -2.0 380,976 - GFF2956 0.77 -1.8 380,976 - GFF2956 0.77 -1.1 380,976 - GFF2956 0.77 +0.9 380,976 - GFF2956 0.77 +0.2 380,976 - GFF2956 0.77 -0.0 380,976 - GFF2956 0.77 -1.2 380,976 - GFF2956 0.77 -0.2 380,976 - GFF2956 0.77 -1.1 380,976 - GFF2956 0.77 +0.1 380,984 + GFF2956 0.78 +0.4 380,985 - GFF2956 0.78 +1.9 381,280 + +0.3 381,406 + -0.3 381,406 + +0.4
Or see this region's nucleotide sequence