Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2939 and GFF2940 overlap by 4 nucleotides GFF2940 and GFF2941 are separated by 39 nucleotides GFF2941 and GFF2942 are separated by 21 nucleotides GFF2942 and GFF2943 overlap by 4 nucleotides
GFF2939 - hypothetical protein, at 365,985 to 366,830
GFF2939
GFF2940 - Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18), at 366,827 to 367,471
GFF2940
GFF2941 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 367,511 to 368,617
GFF2941
GFF2942 - Epoxide hydrolase (EC 3.3.2.9), at 368,639 to 369,559
GFF2942
GFF2943 - S-formylglutathione hydrolase (EC 3.1.2.12), at 369,556 to 370,434
GFF2943
Position (kb) 367
368
369 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 366.522 kb on + strand, within GFF2939 at 366.522 kb on + strand, within GFF2939 at 366.522 kb on + strand, within GFF2939 at 366.522 kb on + strand, within GFF2939 at 366.523 kb on - strand, within GFF2939 at 366.523 kb on - strand, within GFF2939 at 366.523 kb on - strand, within GFF2939 at 366.523 kb on - strand, within GFF2939 at 366.523 kb on - strand, within GFF2939 at 366.842 kb on + strand at 366.842 kb on + strand at 366.842 kb on + strand at 366.842 kb on + strand at 366.842 kb on + strand at 366.843 kb on - strand at 366.843 kb on - strand at 366.843 kb on - strand at 366.843 kb on - strand at 366.843 kb on - strand at 366.843 kb on - strand at 366.843 kb on - strand at 366.843 kb on - strand at 366.843 kb on - strand at 366.843 kb on - strand at 366.909 kb on - strand, within GFF2940 at 366.909 kb on - strand, within GFF2940 at 367.049 kb on + strand, within GFF2940 at 367.049 kb on + strand, within GFF2940 at 367.050 kb on - strand, within GFF2940 at 367.050 kb on - strand, within GFF2940 at 367.064 kb on + strand, within GFF2940 at 367.064 kb on + strand, within GFF2940 at 367.065 kb on - strand, within GFF2940 at 367.339 kb on + strand, within GFF2940 at 367.340 kb on + strand, within GFF2940 at 367.340 kb on + strand, within GFF2940 at 367.340 kb on + strand, within GFF2940 at 367.341 kb on - strand, within GFF2940 at 367.341 kb on - strand, within GFF2940 at 367.341 kb on - strand, within GFF2940 at 367.341 kb on - strand, within GFF2940 at 367.341 kb on - strand, within GFF2940 at 367.341 kb on - strand, within GFF2940 at 367.473 kb on + strand at 367.473 kb on + strand at 367.474 kb on - strand at 367.474 kb on - strand at 367.474 kb on - strand at 367.474 kb on - strand at 367.474 kb on - strand at 367.640 kb on + strand, within GFF2941 at 367.640 kb on + strand, within GFF2941 at 367.640 kb on + strand, within GFF2941 at 367.640 kb on + strand, within GFF2941 at 367.640 kb on + strand, within GFF2941 at 367.640 kb on + strand, within GFF2941 at 367.640 kb on + strand, within GFF2941 at 367.641 kb on - strand, within GFF2941 at 367.641 kb on - strand, within GFF2941 at 367.643 kb on + strand, within GFF2941 at 367.643 kb on + strand, within GFF2941 at 367.643 kb on + strand, within GFF2941 at 367.643 kb on + strand, within GFF2941 at 367.643 kb on + strand, within GFF2941 at 367.643 kb on + strand, within GFF2941 at 367.643 kb on + strand, within GFF2941 at 367.643 kb on + strand, within GFF2941 at 367.643 kb on + strand, within GFF2941 at 367.643 kb on + strand, within GFF2941 at 367.643 kb on + strand, within GFF2941 at 367.643 kb on + strand, within GFF2941 at 367.644 kb on - strand, within GFF2941 at 367.644 kb on - strand, within GFF2941 at 367.644 kb on - strand, within GFF2941 at 367.644 kb on - strand, within GFF2941 at 367.644 kb on - strand, within GFF2941 at 367.644 kb on - strand, within GFF2941 at 367.644 kb on - strand, within GFF2941 at 367.644 kb on - strand, within GFF2941 at 367.644 kb on - strand, within GFF2941 at 367.644 kb on - strand, within GFF2941 at 367.772 kb on + strand, within GFF2941 at 367.772 kb on + strand, within GFF2941 at 367.773 kb on - strand, within GFF2941 at 367.773 kb on - strand, within GFF2941 at 367.773 kb on - strand, within GFF2941 at 367.773 kb on - strand, within GFF2941 at 367.773 kb on - strand, within GFF2941 at 367.913 kb on + strand, within GFF2941 at 367.913 kb on + strand, within GFF2941 at 367.913 kb on + strand, within GFF2941 at 367.913 kb on + strand, within GFF2941 at 367.913 kb on + strand, within GFF2941 at 367.913 kb on + strand, within GFF2941 at 367.913 kb on + strand, within GFF2941 at 367.913 kb on + strand, within GFF2941 at 367.913 kb on + strand, within GFF2941 at 367.913 kb on + strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.914 kb on - strand, within GFF2941 at 367.940 kb on + strand, within GFF2941 at 367.940 kb on + strand, within GFF2941 at 367.940 kb on + strand, within GFF2941 at 367.940 kb on + strand, within GFF2941 at 367.940 kb on + strand, within GFF2941 at 367.941 kb on - strand, within GFF2941 at 367.941 kb on - strand, within GFF2941 at 367.941 kb on - strand, within GFF2941 at 367.941 kb on - strand, within GFF2941 at 367.941 kb on - strand, within GFF2941 at 367.941 kb on - strand, within GFF2941 at 367.941 kb on - strand, within GFF2941 at 368.006 kb on + strand, within GFF2941 at 368.006 kb on + strand, within GFF2941 at 368.006 kb on + strand, within GFF2941 at 368.006 kb on + strand, within GFF2941 at 368.006 kb on + strand, within GFF2941 at 368.006 kb on + strand, within GFF2941 at 368.007 kb on - strand, within GFF2941 at 368.007 kb on - strand, within GFF2941 at 368.007 kb on - strand, within GFF2941 at 368.007 kb on - strand, within GFF2941 at 368.007 kb on - strand, within GFF2941 at 368.007 kb on - strand, within GFF2941 at 368.007 kb on - strand, within GFF2941 at 368.282 kb on + strand, within GFF2941 at 368.282 kb on + strand, within GFF2941 at 368.283 kb on - strand, within GFF2941 at 368.283 kb on - strand, within GFF2941 at 368.283 kb on - strand, within GFF2941 at 368.495 kb on + strand, within GFF2941 at 368.495 kb on + strand, within GFF2941 at 368.495 kb on + strand, within GFF2941 at 368.495 kb on + strand, within GFF2941 at 368.496 kb on - strand, within GFF2941 at 368.496 kb on - strand, within GFF2941 at 368.496 kb on - strand, within GFF2941 at 368.496 kb on - strand, within GFF2941 at 368.496 kb on - strand, within GFF2941 at 368.496 kb on - strand, within GFF2941 at 368.496 kb on - strand, within GFF2941 at 368.496 kb on - strand, within GFF2941 at 368.496 kb on - strand, within GFF2941 at 368.496 kb on - strand, within GFF2941 at 368.612 kb on + strand at 368.612 kb on + strand at 368.612 kb on + strand at 368.613 kb on - strand at 368.613 kb on - strand at 368.693 kb on + strand at 368.693 kb on + strand at 368.693 kb on + strand at 368.693 kb on + strand at 368.694 kb on - strand at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.766 kb on - strand, within GFF2942 at 368.766 kb on - strand, within GFF2942 at 368.766 kb on - strand, within GFF2942 at 368.766 kb on - strand, within GFF2942 at 368.766 kb on - strand, within GFF2942 at 368.819 kb on + strand, within GFF2942 at 368.819 kb on + strand, within GFF2942 at 368.820 kb on - strand, within GFF2942 at 368.820 kb on - strand, within GFF2942 at 368.831 kb on + strand, within GFF2942 at 369.032 kb on + strand, within GFF2942 at 369.032 kb on + strand, within GFF2942 at 369.032 kb on + strand, within GFF2942 at 369.032 kb on + strand, within GFF2942 at 369.033 kb on - strand, within GFF2942 at 369.033 kb on - strand, within GFF2942 at 369.033 kb on - strand, within GFF2942 at 369.033 kb on - strand, within GFF2942 at 369.033 kb on - strand, within GFF2942 at 369.033 kb on - strand, within GFF2942 at 369.033 kb on - strand, within GFF2942 at 369.098 kb on + strand, within GFF2942 at 369.099 kb on - strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.107 kb on + strand, within GFF2942 at 369.107 kb on + strand, within GFF2942 at 369.107 kb on + strand, within GFF2942 at 369.107 kb on + strand, within GFF2942 at 369.107 kb on + strand, within GFF2942 at 369.107 kb on + strand, within GFF2942 at 369.107 kb on + strand, within GFF2942 at 369.108 kb on - strand, within GFF2942 at 369.108 kb on - strand, within GFF2942 at 369.108 kb on - strand, within GFF2942 at 369.108 kb on - strand, within GFF2942 at 369.108 kb on - strand, within GFF2942 at 369.108 kb on - strand, within GFF2942 at 369.108 kb on - strand, within GFF2942 at 369.275 kb on + strand, within GFF2942 at 369.275 kb on + strand, within GFF2942 at 369.275 kb on + strand, within GFF2942 at 369.275 kb on + strand, within GFF2942
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 366,522 + GFF2939 0.63 +0.7 366,522 + GFF2939 0.63 +0.2 366,522 + GFF2939 0.63 +1.2 366,522 + GFF2939 0.63 -1.5 366,523 - GFF2939 0.64 -2.6 366,523 - GFF2939 0.64 +0.1 366,523 - GFF2939 0.64 +1.1 366,523 - GFF2939 0.64 -2.8 366,523 - GFF2939 0.64 +2.0 366,842 + +0.3 366,842 + +1.5 366,842 + +1.1 366,842 + +1.3 366,842 + -2.3 366,843 - +1.1 366,843 - +0.5 366,843 - -1.5 366,843 - -0.7 366,843 - -2.0 366,843 - -2.5 366,843 - -2.2 366,843 - -0.1 366,843 - -2.1 366,843 - -2.2 366,909 - GFF2940 0.13 -0.5 366,909 - GFF2940 0.13 +2.3 367,049 + GFF2940 0.34 -1.3 367,049 + GFF2940 0.34 +0.1 367,050 - GFF2940 0.35 -2.5 367,050 - GFF2940 0.35 +0.1 367,064 + GFF2940 0.37 -1.5 367,064 + GFF2940 0.37 +0.3 367,065 - GFF2940 0.37 -0.1 367,339 + GFF2940 0.79 -0.5 367,340 + GFF2940 0.80 -2.1 367,340 + GFF2940 0.80 -2.2 367,340 + GFF2940 0.80 -0.9 367,341 - GFF2940 0.80 -0.7 367,341 - GFF2940 0.80 -0.9 367,341 - GFF2940 0.80 -1.8 367,341 - GFF2940 0.80 +0.7 367,341 - GFF2940 0.80 +0.6 367,341 - GFF2940 0.80 -0.9 367,473 + -3.1 367,473 + +1.2 367,474 - +0.9 367,474 - -1.4 367,474 - -1.0 367,474 - -0.2 367,474 - +2.1 367,640 + GFF2941 0.12 -0.5 367,640 + GFF2941 0.12 -0.2 367,640 + GFF2941 0.12 -2.1 367,640 + GFF2941 0.12 -2.6 367,640 + GFF2941 0.12 -1.1 367,640 + GFF2941 0.12 +0.8 367,640 + GFF2941 0.12 -1.7 367,641 - GFF2941 0.12 -1.9 367,641 - GFF2941 0.12 -1.7 367,643 + GFF2941 0.12 -0.3 367,643 + GFF2941 0.12 -1.6 367,643 + GFF2941 0.12 -3.5 367,643 + GFF2941 0.12 +1.4 367,643 + GFF2941 0.12 +0.5 367,643 + GFF2941 0.12 -3.4 367,643 + GFF2941 0.12 -0.1 367,643 + GFF2941 0.12 -1.2 367,643 + GFF2941 0.12 -1.8 367,643 + GFF2941 0.12 -1.9 367,643 + GFF2941 0.12 +1.1 367,643 + GFF2941 0.12 +0.4 367,644 - GFF2941 0.12 -3.6 367,644 - GFF2941 0.12 +0.3 367,644 - GFF2941 0.12 -0.9 367,644 - GFF2941 0.12 +0.1 367,644 - GFF2941 0.12 +0.2 367,644 - GFF2941 0.12 +0.5 367,644 - GFF2941 0.12 +0.4 367,644 - GFF2941 0.12 +0.4 367,644 - GFF2941 0.12 +0.6 367,644 - GFF2941 0.12 +1.0 367,772 + GFF2941 0.24 +0.3 367,772 + GFF2941 0.24 +1.2 367,773 - GFF2941 0.24 -0.7 367,773 - GFF2941 0.24 -1.4 367,773 - GFF2941 0.24 -2.0 367,773 - GFF2941 0.24 +0.1 367,773 - GFF2941 0.24 -0.5 367,913 + GFF2941 0.36 -0.7 367,913 + GFF2941 0.36 +0.6 367,913 + GFF2941 0.36 -3.2 367,913 + GFF2941 0.36 -1.4 367,913 + GFF2941 0.36 +0.5 367,913 + GFF2941 0.36 -1.4 367,913 + GFF2941 0.36 -0.9 367,913 + GFF2941 0.36 -0.5 367,913 + GFF2941 0.36 +0.6 367,913 + GFF2941 0.36 +1.3 367,914 - GFF2941 0.36 +0.1 367,914 - GFF2941 0.36 +1.3 367,914 - GFF2941 0.36 -0.7 367,914 - GFF2941 0.36 +0.2 367,914 - GFF2941 0.36 -0.0 367,914 - GFF2941 0.36 -1.7 367,914 - GFF2941 0.36 -0.3 367,914 - GFF2941 0.36 -0.5 367,914 - GFF2941 0.36 -0.2 367,914 - GFF2941 0.36 -0.4 367,914 - GFF2941 0.36 +0.4 367,914 - GFF2941 0.36 +0.5 367,914 - GFF2941 0.36 -1.1 367,914 - GFF2941 0.36 -3.3 367,914 - GFF2941 0.36 -1.1 367,940 + GFF2941 0.39 +0.5 367,940 + GFF2941 0.39 +1.1 367,940 + GFF2941 0.39 -1.7 367,940 + GFF2941 0.39 -1.6 367,940 + GFF2941 0.39 +0.4 367,941 - GFF2941 0.39 -0.7 367,941 - GFF2941 0.39 +2.3 367,941 - GFF2941 0.39 +1.3 367,941 - GFF2941 0.39 -2.1 367,941 - GFF2941 0.39 -2.6 367,941 - GFF2941 0.39 -0.9 367,941 - GFF2941 0.39 +3.5 368,006 + GFF2941 0.45 +1.0 368,006 + GFF2941 0.45 -2.1 368,006 + GFF2941 0.45 +1.2 368,006 + GFF2941 0.45 +2.7 368,006 + GFF2941 0.45 +0.2 368,006 + GFF2941 0.45 -1.1 368,007 - GFF2941 0.45 +2.1 368,007 - GFF2941 0.45 +0.4 368,007 - GFF2941 0.45 -2.1 368,007 - GFF2941 0.45 -0.2 368,007 - GFF2941 0.45 -0.2 368,007 - GFF2941 0.45 -1.2 368,007 - GFF2941 0.45 +0.2 368,282 + GFF2941 0.70 +0.3 368,282 + GFF2941 0.70 -3.1 368,283 - GFF2941 0.70 -1.6 368,283 - GFF2941 0.70 +0.2 368,283 - GFF2941 0.70 -1.7 368,495 + GFF2941 0.89 -0.3 368,495 + GFF2941 0.89 +0.3 368,495 + GFF2941 0.89 -2.7 368,495 + GFF2941 0.89 -2.7 368,496 - GFF2941 0.89 +1.1 368,496 - GFF2941 0.89 +0.5 368,496 - GFF2941 0.89 +1.0 368,496 - GFF2941 0.89 +0.8 368,496 - GFF2941 0.89 +2.0 368,496 - GFF2941 0.89 +1.8 368,496 - GFF2941 0.89 -0.9 368,496 - GFF2941 0.89 -0.2 368,496 - GFF2941 0.89 -2.9 368,496 - GFF2941 0.89 -1.1 368,612 + +0.5 368,612 + -1.1 368,612 + +0.1 368,613 - -1.9 368,613 - +2.1 368,693 + +0.1 368,693 + -0.1 368,693 + -0.4 368,693 + -0.5 368,694 - +0.3 368,765 + GFF2942 0.14 +0.5 368,765 + GFF2942 0.14 +1.1 368,765 + GFF2942 0.14 -0.9 368,765 + GFF2942 0.14 -0.7 368,765 + GFF2942 0.14 +0.1 368,765 + GFF2942 0.14 +1.1 368,765 + GFF2942 0.14 -1.1 368,765 + GFF2942 0.14 +0.4 368,765 + GFF2942 0.14 -0.9 368,765 + GFF2942 0.14 +1.5 368,765 + GFF2942 0.14 -2.0 368,765 + GFF2942 0.14 +0.5 368,766 - GFF2942 0.14 +0.3 368,766 - GFF2942 0.14 -1.8 368,766 - GFF2942 0.14 +0.2 368,766 - GFF2942 0.14 -1.1 368,766 - GFF2942 0.14 +0.1 368,819 + GFF2942 0.20 -0.9 368,819 + GFF2942 0.20 +0.6 368,820 - GFF2942 0.20 +0.1 368,820 - GFF2942 0.20 -0.7 368,831 + GFF2942 0.21 -0.7 369,032 + GFF2942 0.43 +0.9 369,032 + GFF2942 0.43 -0.7 369,032 + GFF2942 0.43 -0.7 369,032 + GFF2942 0.43 -0.2 369,033 - GFF2942 0.43 +0.6 369,033 - GFF2942 0.43 -0.7 369,033 - GFF2942 0.43 -0.1 369,033 - GFF2942 0.43 -1.7 369,033 - GFF2942 0.43 -1.9 369,033 - GFF2942 0.43 -0.5 369,033 - GFF2942 0.43 +0.3 369,098 + GFF2942 0.50 -2.2 369,099 - GFF2942 0.50 -0.4 369,104 + GFF2942 0.50 -0.5 369,104 + GFF2942 0.50 -0.7 369,104 + GFF2942 0.50 -0.5 369,104 + GFF2942 0.50 -1.7 369,104 + GFF2942 0.50 -1.0 369,104 + GFF2942 0.50 +0.6 369,104 + GFF2942 0.50 +0.1 369,104 + GFF2942 0.50 -0.4 369,105 - GFF2942 0.51 -1.0 369,105 - GFF2942 0.51 -2.8 369,105 - GFF2942 0.51 -0.5 369,105 - GFF2942 0.51 -1.9 369,105 - GFF2942 0.51 -0.5 369,105 - GFF2942 0.51 -0.7 369,105 - GFF2942 0.51 +0.5 369,105 - GFF2942 0.51 +2.1 369,105 - GFF2942 0.51 -0.2 369,105 - GFF2942 0.51 +2.1 369,105 - GFF2942 0.51 -0.2 369,105 - GFF2942 0.51 +0.5 369,107 + GFF2942 0.51 +0.6 369,107 + GFF2942 0.51 -0.9 369,107 + GFF2942 0.51 -0.2 369,107 + GFF2942 0.51 -0.5 369,107 + GFF2942 0.51 -0.8 369,107 + GFF2942 0.51 -1.5 369,107 + GFF2942 0.51 -0.6 369,108 - GFF2942 0.51 +1.3 369,108 - GFF2942 0.51 +0.5 369,108 - GFF2942 0.51 -1.2 369,108 - GFF2942 0.51 +0.7 369,108 - GFF2942 0.51 -0.2 369,108 - GFF2942 0.51 +1.1 369,108 - GFF2942 0.51 -0.9 369,275 + GFF2942 0.69 -2.4 369,275 + GFF2942 0.69 +0.9 369,275 + GFF2942 0.69 +0.0 369,275 + GFF2942 0.69 +1.1
Or see this region's nucleotide sequence