Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2883 and GFF2884 overlap by 4 nucleotides GFF2884 and GFF2885 are separated by 101 nucleotides
GFF2883 - CaiB/BaiF family protein, at 309,100 to 310,305
GFF2883
GFF2884 - Pyruvate:Oxaloacetate transcarboxylase domain protein, at 310,302 to 311,249
GFF2884
GFF2885 - Transcriptional regulator, LysR family, at 311,351 to 312,253
GFF2885
Position (kb) 310
311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 309.335 kb on + strand, within GFF2883 at 309.335 kb on + strand, within GFF2883 at 309.335 kb on + strand, within GFF2883 at 309.335 kb on + strand, within GFF2883 at 309.587 kb on - strand, within GFF2883 at 309.587 kb on - strand, within GFF2883 at 309.602 kb on + strand, within GFF2883 at 309.602 kb on + strand, within GFF2883 at 309.603 kb on - strand, within GFF2883 at 309.603 kb on - strand, within GFF2883 at 309.603 kb on - strand, within GFF2883 at 309.603 kb on - strand, within GFF2883 at 309.603 kb on - strand, within GFF2883 at 309.603 kb on - strand, within GFF2883 at 309.662 kb on + strand, within GFF2883 at 309.662 kb on + strand, within GFF2883 at 309.663 kb on - strand, within GFF2883 at 309.663 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.938 kb on + strand, within GFF2883 at 309.938 kb on + strand, within GFF2883 at 309.938 kb on + strand, within GFF2883 at 309.938 kb on + strand, within GFF2883 at 309.938 kb on + strand, within GFF2883 at 309.938 kb on + strand, within GFF2883 at 309.938 kb on + strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.986 kb on + strand, within GFF2883 at 309.986 kb on + strand, within GFF2883 at 309.986 kb on + strand, within GFF2883 at 309.986 kb on + strand, within GFF2883 at 309.986 kb on + strand, within GFF2883 at 309.986 kb on + strand, within GFF2883 at 309.987 kb on - strand, within GFF2883 at 309.987 kb on - strand, within GFF2883 at 309.987 kb on - strand, within GFF2883 at 309.987 kb on - strand, within GFF2883 at 309.987 kb on - strand, within GFF2883 at 309.987 kb on - strand, within GFF2883 at 309.989 kb on + strand, within GFF2883 at 310.299 kb on + strand at 310.299 kb on + strand at 310.300 kb on - strand at 310.300 kb on - strand at 310.300 kb on - strand at 310.300 kb on - strand at 310.300 kb on - strand at 310.560 kb on + strand, within GFF2884 at 310.560 kb on + strand, within GFF2884 at 310.560 kb on + strand, within GFF2884 at 310.560 kb on + strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.576 kb on + strand, within GFF2884 at 310.576 kb on + strand, within GFF2884 at 310.577 kb on - strand, within GFF2884 at 310.577 kb on - strand, within GFF2884 at 310.577 kb on - strand, within GFF2884 at 311.038 kb on + strand, within GFF2884 at 311.038 kb on + strand, within GFF2884 at 311.039 kb on - strand, within GFF2884 at 311.273 kb on + strand at 311.274 kb on - strand at 311.287 kb on + strand at 311.287 kb on + strand at 311.287 kb on + strand at 311.288 kb on - strand at 311.288 kb on - strand at 311.288 kb on - strand at 311.313 kb on + strand at 311.612 kb on + strand, within GFF2885 at 311.613 kb on - strand, within GFF2885 at 311.613 kb on - strand, within GFF2885 at 311.722 kb on + strand, within GFF2885 at 311.723 kb on - strand, within GFF2885 at 311.843 kb on + strand, within GFF2885 at 311.843 kb on + strand, within GFF2885 at 311.843 kb on + strand, within GFF2885 at 311.844 kb on - strand, within GFF2885 at 311.844 kb on - strand, within GFF2885 at 312.119 kb on + strand, within GFF2885 at 312.119 kb on + strand, within GFF2885
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 309,335 + GFF2883 0.19 -1.8 309,335 + GFF2883 0.19 -0.4 309,335 + GFF2883 0.19 +1.3 309,335 + GFF2883 0.19 -2.0 309,587 - GFF2883 0.40 +1.9 309,587 - GFF2883 0.40 +2.1 309,602 + GFF2883 0.42 +2.5 309,602 + GFF2883 0.42 +0.6 309,603 - GFF2883 0.42 +2.1 309,603 - GFF2883 0.42 +0.3 309,603 - GFF2883 0.42 -1.5 309,603 - GFF2883 0.42 -0.3 309,603 - GFF2883 0.42 +0.9 309,603 - GFF2883 0.42 +0.1 309,662 + GFF2883 0.47 +0.6 309,662 + GFF2883 0.47 -2.7 309,663 - GFF2883 0.47 -0.9 309,663 - GFF2883 0.47 -1.9 309,852 - GFF2883 0.62 -0.5 309,852 - GFF2883 0.62 +1.4 309,852 - GFF2883 0.62 -0.4 309,852 - GFF2883 0.62 -0.8 309,852 - GFF2883 0.62 +0.7 309,852 - GFF2883 0.62 -3.2 309,852 - GFF2883 0.62 +2.1 309,852 - GFF2883 0.62 +0.5 309,938 + GFF2883 0.69 -2.9 309,938 + GFF2883 0.69 -0.1 309,938 + GFF2883 0.69 -1.6 309,938 + GFF2883 0.69 +1.1 309,938 + GFF2883 0.69 +0.3 309,938 + GFF2883 0.69 -1.8 309,938 + GFF2883 0.69 +0.7 309,939 - GFF2883 0.70 -1.3 309,939 - GFF2883 0.70 +2.1 309,939 - GFF2883 0.70 -1.6 309,939 - GFF2883 0.70 +0.6 309,939 - GFF2883 0.70 +1.1 309,939 - GFF2883 0.70 -0.8 309,939 - GFF2883 0.70 +1.0 309,939 - GFF2883 0.70 +0.3 309,939 - GFF2883 0.70 +0.0 309,939 - GFF2883 0.70 +1.1 309,986 + GFF2883 0.73 +0.9 309,986 + GFF2883 0.73 -1.2 309,986 + GFF2883 0.73 +1.3 309,986 + GFF2883 0.73 +0.5 309,986 + GFF2883 0.73 +0.1 309,986 + GFF2883 0.73 +0.8 309,987 - GFF2883 0.74 -0.9 309,987 - GFF2883 0.74 -0.3 309,987 - GFF2883 0.74 -1.8 309,987 - GFF2883 0.74 -1.6 309,987 - GFF2883 0.74 -0.4 309,987 - GFF2883 0.74 +0.2 309,989 + GFF2883 0.74 -2.5 310,299 + -0.9 310,299 + -0.9 310,300 - -1.3 310,300 - +1.5 310,300 - -2.6 310,300 - -0.6 310,300 - +0.9 310,560 + GFF2884 0.27 -0.7 310,560 + GFF2884 0.27 +0.9 310,560 + GFF2884 0.27 -1.5 310,560 + GFF2884 0.27 -0.7 310,561 - GFF2884 0.27 -0.5 310,561 - GFF2884 0.27 +0.5 310,561 - GFF2884 0.27 +3.3 310,561 - GFF2884 0.27 +3.2 310,561 - GFF2884 0.27 +0.5 310,561 - GFF2884 0.27 -1.0 310,561 - GFF2884 0.27 -0.4 310,561 - GFF2884 0.27 -1.4 310,576 + GFF2884 0.29 +2.7 310,576 + GFF2884 0.29 +0.5 310,577 - GFF2884 0.29 -0.2 310,577 - GFF2884 0.29 +0.8 310,577 - GFF2884 0.29 -0.6 311,038 + GFF2884 0.78 -0.6 311,038 + GFF2884 0.78 -2.8 311,039 - GFF2884 0.78 -0.5 311,273 + +1.1 311,274 - -2.7 311,287 + -0.8 311,287 + -0.3 311,287 + -0.8 311,288 - +0.7 311,288 - +1.0 311,288 - -2.0 311,313 + -2.1 311,612 + GFF2885 0.29 -2.4 311,613 - GFF2885 0.29 +2.9 311,613 - GFF2885 0.29 -3.5 311,722 + GFF2885 0.41 -0.7 311,723 - GFF2885 0.41 +2.0 311,843 + GFF2885 0.54 +1.2 311,843 + GFF2885 0.54 +0.5 311,843 + GFF2885 0.54 +0.5 311,844 - GFF2885 0.55 +1.9 311,844 - GFF2885 0.55 +0.4 312,119 + GFF2885 0.85 -0.3 312,119 + GFF2885 0.85 -1.4
Or see this region's nucleotide sequence