Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2812 and GFF2813 are separated by 170 nucleotides GFF2813 and GFF2814 are separated by 12 nucleotides GFF2814 and GFF2815 are separated by 21 nucleotides GFF2815 and GFF2816 are separated by 76 nucleotides
GFF2812 - Replicative DNA helicase (DnaB) (EC 3.6.4.12), at 239,701 to 241,107
GFF2812
GFF2813 - LSU ribosomal protein L9p, at 241,278 to 241,730
GFF2813
GFF2814 - SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent, at 241,743 to 242,024
GFF2814
GFF2815 - Primosomal replication protein N, at 242,046 to 242,288
GFF2815
GFF2816 - SSU ribosomal protein S6p, at 242,365 to 242,739
GFF2816
Position (kb) 241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 241.133 kb on + strand at 241.133 kb on + strand at 241.133 kb on + strand at 241.133 kb on + strand at 241.133 kb on + strand at 241.133 kb on + strand at 241.133 kb on + strand at 241.133 kb on + strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.174 kb on + strand at 241.174 kb on + strand at 241.174 kb on + strand at 241.175 kb on - strand at 241.175 kb on - strand at 241.294 kb on + strand at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.657 kb on + strand, within GFF2813 at 241.723 kb on - strand at 241.744 kb on + strand at 241.744 kb on + strand at 241.744 kb on + strand at 241.745 kb on - strand at 241.745 kb on - strand at 241.765 kb on + strand at 241.766 kb on - strand at 242.070 kb on - strand at 242.070 kb on - strand at 242.070 kb on - strand at 242.214 kb on - strand, within GFF2815 at 242.214 kb on - strand, within GFF2815 at 242.214 kb on - strand, within GFF2815 at 242.214 kb on - strand, within GFF2815 at 242.214 kb on - strand, within GFF2815 at 242.385 kb on - strand at 242.385 kb on - strand at 242.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 241,133 + -2.9 241,133 + -2.0 241,133 + +0.0 241,133 + -0.1 241,133 + -0.9 241,133 + +0.4 241,133 + -0.4 241,133 + -3.2 241,134 - +0.3 241,134 - -0.3 241,134 - -1.0 241,134 - -2.3 241,134 - -3.6 241,134 - -2.5 241,134 - +1.3 241,134 - -0.4 241,134 - -0.8 241,174 + +3.6 241,174 + -0.8 241,174 + -0.6 241,175 - -1.2 241,175 - -1.0 241,294 + -1.4 241,411 + GFF2813 0.29 -0.6 241,411 + GFF2813 0.29 -1.6 241,411 + GFF2813 0.29 +0.5 241,411 + GFF2813 0.29 -2.1 241,411 + GFF2813 0.29 -0.6 241,411 + GFF2813 0.29 -0.3 241,411 + GFF2813 0.29 -1.1 241,411 + GFF2813 0.29 -1.1 241,411 + GFF2813 0.29 +1.0 241,412 - GFF2813 0.30 -2.7 241,412 - GFF2813 0.30 +0.4 241,412 - GFF2813 0.30 -1.1 241,412 - GFF2813 0.30 +1.9 241,412 - GFF2813 0.30 -0.0 241,412 - GFF2813 0.30 -3.1 241,412 - GFF2813 0.30 +1.1 241,412 - GFF2813 0.30 +0.5 241,412 - GFF2813 0.30 -2.0 241,412 - GFF2813 0.30 -0.3 241,412 - GFF2813 0.30 -1.1 241,412 - GFF2813 0.30 +1.0 241,657 + GFF2813 0.84 +2.0 241,723 - -1.4 241,744 + +0.4 241,744 + +2.0 241,744 + +0.0 241,745 - -0.6 241,745 - +2.0 241,765 + +2.0 241,766 - +0.4 242,070 - -1.3 242,070 - -1.6 242,070 - -1.7 242,214 - GFF2815 0.69 -1.1 242,214 - GFF2815 0.69 -2.2 242,214 - GFF2815 0.69 -2.1 242,214 - GFF2815 0.69 -0.6 242,214 - GFF2815 0.69 -3.1 242,385 - -0.8 242,385 - -1.7 242,385 - -1.4
Or see this region's nucleotide sequence